Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 AC006015.1-201ENST00000429970 570 ntBASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.37■□□□□ 0.85
TCRBV7S3A2A0A539 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 MCRIP2P1-201ENST00000394346 511 ntBASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TCRBV7S3A2A0A539 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 AC016769.1-201ENST00000409132 1010 ntBASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 AL355472.2-201ENST00000422958 438 ntBASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 RARRES2P6-201ENST00000567333 442 ntBASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TCRBV7S3A2A0A539 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 AC100791.3-201ENST00000617619 330 ntBASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
TCRBV7S3A2A0A539 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 AC105020.6-201ENST00000621523 1217 ntBASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.33■□□□□ 0.85
TCRBV7S3A2A0A539 KRT8P17-201ENST00000453110 1448 ntBASIC20.33■□□□□ 0.84
TCRBV7S3A2A0A539 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
TCRBV7S3A2A0A539 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TCRBV7S3A2A0A539 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
TCRBV7S3A2A0A539 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
TCRBV7S3A2A0A539 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms