Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 GCSHP5-201ENST00000443090 522 ntBASIC20.55■□□□□ 0.88
SKA1Q96BD8 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 AP003097.1-201ENST00000530657 1135 ntBASIC20.55■□□□□ 0.88
SKA1Q96BD8 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SKA1Q96BD8 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SKA1Q96BD8 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SKA1Q96BD8 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SKA1Q96BD8 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SKA1Q96BD8 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SKA1Q96BD8 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.54■□□□□ 0.88
SKA1Q96BD8 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SKA1Q96BD8 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SKA1Q96BD8 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SKA1Q96BD8 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SKA1Q96BD8 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SKA1Q96BD8 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.54■□□□□ 0.88
SKA1Q96BD8 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SKA1Q96BD8 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.54■□□□□ 0.88
SKA1Q96BD8 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.54■□□□□ 0.88
SKA1Q96BD8 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.54■□□□□ 0.88
SKA1Q96BD8 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.54■□□□□ 0.88
SKA1Q96BD8 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.54■□□□□ 0.88
SKA1Q96BD8 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
SKA1Q96BD8 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SKA1Q96BD8 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SKA1Q96BD8 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SKA1Q96BD8 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.54■□□□□ 0.88
SKA1Q96BD8 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.54■□□□□ 0.88
SKA1Q96BD8 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SKA1Q96BD8 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SKA1Q96BD8 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SKA1Q96BD8 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SKA1Q96BD8 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.53■□□□□ 0.88
SKA1Q96BD8 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.53■□□□□ 0.88
SKA1Q96BD8 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.53■□□□□ 0.88
SKA1Q96BD8 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SKA1Q96BD8 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.53■□□□□ 0.88
SKA1Q96BD8 AL158047.1-201ENST00000445918 881 ntBASIC20.53■□□□□ 0.88
SKA1Q96BD8 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 RPS2P52-201ENST00000469610 820 ntBASIC20.53■□□□□ 0.88
SKA1Q96BD8 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SKA1Q96BD8 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.53■□□□□ 0.88
SKA1Q96BD8 AC060766.5-201ENST00000590539 871 ntBASIC20.53■□□□□ 0.88
SKA1Q96BD8 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SKA1Q96BD8 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.53■□□□□ 0.88
SKA1Q96BD8 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SKA1Q96BD8 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SKA1Q96BD8 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SKA1Q96BD8 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SKA1Q96BD8 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SKA1Q96BD8 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SKA1Q96BD8 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SKA1Q96BD8 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SKA1Q96BD8 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SKA1Q96BD8 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.52■□□□□ 0.88
SKA1Q96BD8 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SKA1Q96BD8 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.52■□□□□ 0.88
SKA1Q96BD8 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.52■□□□□ 0.88
SKA1Q96BD8 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.52■□□□□ 0.88
SKA1Q96BD8 HLA-B-256ENST00000639848 1089 ntBASIC20.52■□□□□ 0.88
SKA1Q96BD8 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SKA1Q96BD8 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SKA1Q96BD8 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SKA1Q96BD8 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SKA1Q96BD8 KRT17P1-201ENST00000399211 1546 ntBASIC20.52■□□□□ 0.87
SKA1Q96BD8 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.52■□□□□ 0.87
SKA1Q96BD8 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
SKA1Q96BD8 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.51■□□□□ 0.87
SKA1Q96BD8 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SKA1Q96BD8 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.51■□□□□ 0.87
SKA1Q96BD8 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SKA1Q96BD8 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.51■□□□□ 0.87
SKA1Q96BD8 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SKA1Q96BD8 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SKA1Q96BD8 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms