Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TNFRSF4P43489 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TNFRSF4P43489 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TNFRSF4P43489 MIR1224-201ENST00000408193 85 ntBASIC20.28■□□□□ 0.84
TNFRSF4P43489 AP002982.1-201ENST00000492365 877 ntBASIC20.28■□□□□ 0.84
TNFRSF4P43489 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.28■□□□□ 0.84
TNFRSF4P43489 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
TNFRSF4P43489 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
TNFRSF4P43489 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.28■□□□□ 0.84
TNFRSF4P43489 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.28■□□□□ 0.84
TNFRSF4P43489 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TNFRSF4P43489 PLK5-205ENST00000642079 1969 ntBASIC20.28■□□□□ 0.84
TNFRSF4P43489 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TNFRSF4P43489 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TNFRSF4P43489 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TNFRSF4P43489 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TNFRSF4P43489 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
TNFRSF4P43489 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TNFRSF4P43489 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
TNFRSF4P43489 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TNFRSF4P43489 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TNFRSF4P43489 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
TNFRSF4P43489 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TNFRSF4P43489 MMP23A-201ENST00000234610 1017 ntBASIC20.27■□□□□ 0.84
TNFRSF4P43489 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TNFRSF4P43489 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
TNFRSF4P43489 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TNFRSF4P43489 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.27■□□□□ 0.84
TNFRSF4P43489 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
TNFRSF4P43489 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.83
TNFRSF4P43489 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.83
TNFRSF4P43489 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFRSF4P43489 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFRSF4P43489 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TNFRSF4P43489 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.26■□□□□ 0.83
TNFRSF4P43489 AL121603.2-201ENST00000557373 2117 ntBASIC20.26■□□□□ 0.83
TNFRSF4P43489 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFRSF4P43489 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TNFRSF4P43489 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
TNFRSF4P43489 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFRSF4P43489 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.26■□□□□ 0.83
TNFRSF4P43489 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.26■□□□□ 0.83
TNFRSF4P43489 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.26■□□□□ 0.83
TNFRSF4P43489 KRT18P21-201ENST00000515767 1272 ntBASIC20.26■□□□□ 0.83
TNFRSF4P43489 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TNFRSF4P43489 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.26■□□□□ 0.83
TNFRSF4P43489 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.26■□□□□ 0.83
TNFRSF4P43489 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TNFRSF4P43489 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFRSF4P43489 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFRSF4P43489 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFRSF4P43489 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFRSF4P43489 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.26■□□□□ 0.83
TNFRSF4P43489 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.26■□□□□ 0.83
TNFRSF4P43489 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TNFRSF4P43489 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFRSF4P43489 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFRSF4P43489 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.25■□□□□ 0.83
TNFRSF4P43489 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFRSF4P43489 NUDT16P1-203ENST00000513809 620 ntBASIC20.25■□□□□ 0.83
TNFRSF4P43489 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.25■□□□□ 0.83
TNFRSF4P43489 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.25■□□□□ 0.83
TNFRSF4P43489 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFRSF4P43489 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TNFRSF4P43489 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
TNFRSF4P43489 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFRSF4P43489 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.25■□□□□ 0.83
TNFRSF4P43489 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFRSF4P43489 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFRSF4P43489 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFRSF4P43489 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFRSF4P43489 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFRSF4P43489 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
TNFRSF4P43489 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.24■□□□□ 0.83
TNFRSF4P43489 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TNFRSF4P43489 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
TNFRSF4P43489 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.24■□□□□ 0.83
TNFRSF4P43489 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TNFRSF4P43489 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFRSF4P43489 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFRSF4P43489 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFRSF4P43489 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFRSF4P43489 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.24■□□□□ 0.83
TNFRSF4P43489 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TNFRSF4P43489 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.24■□□□□ 0.83
TNFRSF4P43489 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.24■□□□□ 0.83
TNFRSF4P43489 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TNFRSF4P43489 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.24■□□□□ 0.83
TNFRSF4P43489 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFRSF4P43489 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFRSF4P43489 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.23■□□□□ 0.83
TNFRSF4P43489 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TNFRSF4P43489 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TNFRSF4P43489 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.23■□□□□ 0.83
TNFRSF4P43489 KSR1P1-201ENST00000446298 240 ntBASIC20.23■□□□□ 0.83
TNFRSF4P43489 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.23■□□□□ 0.83
TNFRSF4P43489 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TNFRSF4P43489 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
TNFRSF4P43489 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TNFRSF4P43489 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms