Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 FITM1-202ENST00000559294 800 ntBASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 TPM1-226ENST00000560959 925 ntTSL 2 BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 AC010947.1-201ENST00000623454 693 ntBASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 TERF1P1-201ENST00000311003 1181 ntBASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 KSR1P1-201ENST00000446298 240 ntBASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 NME3-204ENST00000563498 920 ntTSL 2 BASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CSB-PGBD3P0DP91 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC26.7■■□□□ 1.87
CSB-PGBD3P0DP91 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.87
CSB-PGBD3P0DP91 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC26.7■■□□□ 1.87
CSB-PGBD3P0DP91 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC26.7■■□□□ 1.87
CSB-PGBD3P0DP91 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC26.7■■□□□ 1.86
CSB-PGBD3P0DP91 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.86
CSB-PGBD3P0DP91 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CSB-PGBD3P0DP91 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC26.7■■□□□ 1.86
CSB-PGBD3P0DP91 NIFKP9-201ENST00000419265 221 ntBASIC26.7■■□□□ 1.86
CSB-PGBD3P0DP91 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CSB-PGBD3P0DP91 AC116562.2-201ENST00000507042 360 ntBASIC26.7■■□□□ 1.86
CSB-PGBD3P0DP91 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC26.7■■□□□ 1.86
CSB-PGBD3P0DP91 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC26.7■■□□□ 1.86
CSB-PGBD3P0DP91 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC26.7■■□□□ 1.86
CSB-PGBD3P0DP91 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
CSB-PGBD3P0DP91 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 KRT16P1-201ENST00000399124 1418 ntBASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 TMA16-209ENST00000513272 803 ntTSL 2 BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC26.69■■□□□ 1.86
CSB-PGBD3P0DP91 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
CSB-PGBD3P0DP91 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 CRAT-202ENST00000393384 973 ntTSL 2 BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 CFL2-205ENST00000555765 632 ntTSL 2 BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CSB-PGBD3P0DP91 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CSB-PGBD3P0DP91 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CSB-PGBD3P0DP91 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CSB-PGBD3P0DP91 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms