Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VIMP08670 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VIMP08670 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VIMP08670 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VIMP08670 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.14■□□□□ 0.81
VIMP08670 TREX1-205ENST00000625293 1783 ntBASIC20.13■□□□□ 0.81
VIMP08670 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VIMP08670 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.13■□□□□ 0.81
VIMP08670 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
VIMP08670 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VIMP08670 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VIMP08670 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.13■□□□□ 0.81
VIMP08670 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.13■□□□□ 0.81
VIMP08670 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VIMP08670 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
VIMP08670 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VIMP08670 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
VIMP08670 AC005082.1-201ENST00000413042 2259 ntBASIC20.13■□□□□ 0.81
VIMP08670 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VIMP08670 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
VIMP08670 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VIMP08670 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VIMP08670 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VIMP08670 AC009237.3-201ENST00000393279 1427 ntBASIC20.12■□□□□ 0.81
VIMP08670 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VIMP08670 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.12■□□□□ 0.81
VIMP08670 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VIMP08670 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.12■□□□□ 0.81
VIMP08670 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.12■□□□□ 0.81
VIMP08670 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
VIMP08670 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
VIMP08670 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
VIMP08670 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.12■□□□□ 0.81
VIMP08670 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.12■□□□□ 0.81
VIMP08670 AC009299.2-201ENST00000482477 511 ntBASIC20.12■□□□□ 0.81
VIMP08670 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.12■□□□□ 0.81
VIMP08670 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VIMP08670 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VIMP08670 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.12■□□□□ 0.81
VIMP08670 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VIMP08670 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VIMP08670 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VIMP08670 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.12■□□□□ 0.81
VIMP08670 AC007613.1-201ENST00000572811 2597 ntBASIC20.12■□□□□ 0.81
VIMP08670 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
VIMP08670 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.12■□□□□ 0.81
VIMP08670 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VIMP08670 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VIMP08670 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VIMP08670 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
VIMP08670 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
VIMP08670 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
VIMP08670 AP004607.4-201ENST00000530158 1459 ntBASIC20.11■□□□□ 0.81
VIMP08670 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
VIMP08670 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.11■□□□□ 0.81
VIMP08670 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.11■□□□□ 0.81
VIMP08670 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.11■□□□□ 0.81
VIMP08670 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.11■□□□□ 0.81
VIMP08670 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.11■□□□□ 0.81
VIMP08670 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VIMP08670 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.1■□□□□ 0.81
VIMP08670 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
VIMP08670 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.1■□□□□ 0.81
VIMP08670 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VIMP08670 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VIMP08670 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
VIMP08670 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.1■□□□□ 0.81
VIMP08670 SRD5A1P1-201ENST00000442297 786 ntBASIC20.1■□□□□ 0.81
VIMP08670 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VIMP08670 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VIMP08670 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VIMP08670 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VIMP08670 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VIMP08670 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
VIMP08670 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
VIMP08670 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.09■□□□□ 0.81
VIMP08670 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VIMP08670 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.09■□□□□ 0.81
VIMP08670 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.09■□□□□ 0.81
VIMP08670 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VIMP08670 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.09■□□□□ 0.81
VIMP08670 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VIMP08670 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.09■□□□□ 0.81
VIMP08670 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.09■□□□□ 0.81
VIMP08670 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.09■□□□□ 0.81
VIMP08670 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.09■□□□□ 0.81
VIMP08670 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms