Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 LSM12P1-201ENST00000411836 588 ntBASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 AC007322.3-201ENST00000426526 701 ntBASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.66■□□□□ 0.74
PCDHB3Q9Y5E6 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 MCRIP2P1-201ENST00000394346 511 ntBASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 ESRRAP1-201ENST00000400596 1257 ntBASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 CYP2T3P-201ENST00000601990 817 ntBASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHB3Q9Y5E6 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PCDHB3Q9Y5E6 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.64■□□□□ 0.74
PCDHB3Q9Y5E6 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PCDHB3Q9Y5E6 PRORSD1P-201ENST00000295112 541 ntBASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHB3Q9Y5E6 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 AFG3L1P-217ENST00000557444 2447 ntBASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PCDHB3Q9Y5E6 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms