Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 SLC7A5P1-201ENST00000568957 537 ntBASIC19.4■□□□□ 0.7
VPS4AQ9UN37 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 AFG3L1P-217ENST00000557444 2447 ntBASIC19.4■□□□□ 0.7
VPS4AQ9UN37 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4AQ9UN37 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 AC010141.2-201ENST00000452426 721 ntBASIC19.39■□□□□ 0.69
VPS4AQ9UN37 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 AC008694.1-202ENST00000636953 945 ntBASIC19.39■□□□□ 0.69
VPS4AQ9UN37 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4AQ9UN37 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 AL158047.1-201ENST00000445918 881 ntBASIC19.38■□□□□ 0.69
VPS4AQ9UN37 RPS2P4-201ENST00000476944 856 ntBASIC19.38■□□□□ 0.69
VPS4AQ9UN37 RARRES2P4-201ENST00000514074 484 ntBASIC19.38■□□□□ 0.69
VPS4AQ9UN37 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 AC112907.3-201ENST00000577781 2400 ntBASIC19.38■□□□□ 0.69
VPS4AQ9UN37 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4AQ9UN37 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 GCSHP5-201ENST00000443090 522 ntBASIC19.37■□□□□ 0.69
VPS4AQ9UN37 AC098590.1-201ENST00000468126 897 ntBASIC19.37■□□□□ 0.69
VPS4AQ9UN37 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms