Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 TPRG1LP1-201ENST00000598702 760 ntBASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 CPT2-209ENST00000636935 803 ntTSL 5 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 BX323043.1-201ENST00000641006 1765 ntBASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 AC092720.2-201ENST00000602388 1665 ntBASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.25■□□□□ 0.35
CHMP1AQ9HD42 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 AC142381.2-201ENST00000566120 298 ntBASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 AL512408.1-201ENST00000569378 2000 ntBASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.24■□□□□ 0.35
CHMP1AQ9HD42 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 AL031432.3-201ENST00000607698 485 ntBASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP1AQ9HD42 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms