Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 PRORSD1P-201ENST00000295112 541 ntBASIC21.54■■□□□ 1.04
ZNF560Q96MR9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 AC069544.1-201ENST00000609399 999 ntBASIC21.54■■□□□ 1.04
ZNF560Q96MR9 AC120498.8-201ENST00000614275 531 ntBASIC21.54■■□□□ 1.04
ZNF560Q96MR9 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF560Q96MR9 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
ZNF560Q96MR9 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF560Q96MR9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.03
ZNF560Q96MR9 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
ZNF560Q96MR9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 KRT8P17-201ENST00000453110 1448 ntBASIC21.51■■□□□ 1.03
ZNF560Q96MR9 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
ZNF560Q96MR9 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.5■■□□□ 1.03
ZNF560Q96MR9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
ZNF560Q96MR9 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF560Q96MR9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF560Q96MR9 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF560Q96MR9 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF560Q96MR9 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
ZNF560Q96MR9 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF560Q96MR9 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.49■■□□□ 1.03
ZNF560Q96MR9 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.49■■□□□ 1.03
ZNF560Q96MR9 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF560Q96MR9 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms