Protein–RNA interactions for Protein: Q15878

CACNA1E, Voltage-dependent R-type calcium channel subunit alpha-1E, humanhuman

Predictions only

Length 2,313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1EQ15878 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1EQ15878 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1EQ15878 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.7■□□□□ 0.74
CACNA1EQ15878 AC010947.1-201ENST00000623454 693 ntBASIC19.7■□□□□ 0.74
CACNA1EQ15878 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CACNA1EQ15878 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1EQ15878 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1EQ15878 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1EQ15878 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.7■□□□□ 0.74
CACNA1EQ15878 KRT16P1-201ENST00000399124 1418 ntBASIC19.7■□□□□ 0.74
CACNA1EQ15878 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1EQ15878 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.69■□□□□ 0.74
CACNA1EQ15878 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1EQ15878 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.69■□□□□ 0.74
CACNA1EQ15878 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1EQ15878 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.69■□□□□ 0.74
CACNA1EQ15878 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.69■□□□□ 0.74
CACNA1EQ15878 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.69■□□□□ 0.74
CACNA1EQ15878 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
CACNA1EQ15878 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
CACNA1EQ15878 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1EQ15878 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.69■□□□□ 0.74
CACNA1EQ15878 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1EQ15878 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.69■□□□□ 0.74
CACNA1EQ15878 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.69■□□□□ 0.74
CACNA1EQ15878 AP002982.1-201ENST00000492365 877 ntBASIC19.69■□□□□ 0.74
CACNA1EQ15878 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CACNA1EQ15878 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.69■□□□□ 0.74
CACNA1EQ15878 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1EQ15878 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.68■□□□□ 0.74
CACNA1EQ15878 SLC25A3P1-201ENST00000443844 931 ntBASIC19.68■□□□□ 0.74
CACNA1EQ15878 FITM1-202ENST00000559294 800 ntBASIC19.68■□□□□ 0.74
CACNA1EQ15878 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.68■□□□□ 0.74
CACNA1EQ15878 LINC01568-207ENST00000641790 1380 ntBASIC19.68■□□□□ 0.74
CACNA1EQ15878 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CACNA1EQ15878 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1EQ15878 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1EQ15878 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1EQ15878 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1EQ15878 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1EQ15878 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1EQ15878 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1EQ15878 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.67■□□□□ 0.74
CACNA1EQ15878 AP000525.1-201ENST00000608286 694 ntBASIC19.67■□□□□ 0.74
CACNA1EQ15878 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CACNA1EQ15878 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.67■□□□□ 0.74
CACNA1EQ15878 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1EQ15878 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1EQ15878 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CACNA1EQ15878 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1EQ15878 TERF1P1-201ENST00000311003 1181 ntBASIC19.67■□□□□ 0.74
CACNA1EQ15878 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.67■□□□□ 0.74
CACNA1EQ15878 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CACNA1EQ15878 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
CACNA1EQ15878 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CACNA1EQ15878 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
CACNA1EQ15878 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.66■□□□□ 0.74
CACNA1EQ15878 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 AC027702.1-201ENST00000563810 1770 ntBASIC19.66■□□□□ 0.74
CACNA1EQ15878 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1EQ15878 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1EQ15878 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1EQ15878 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1EQ15878 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.65■□□□□ 0.74
CACNA1EQ15878 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.65■□□□□ 0.74
CACNA1EQ15878 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.65■□□□□ 0.74
CACNA1EQ15878 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.65■□□□□ 0.74
CACNA1EQ15878 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.65■□□□□ 0.74
CACNA1EQ15878 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.65■□□□□ 0.74
CACNA1EQ15878 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1EQ15878 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1EQ15878 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms