Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM3P62310 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
LSM3P62310 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.13■□□□□ 0.49
LSM3P62310 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.13■□□□□ 0.49
LSM3P62310 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.13■□□□□ 0.49
LSM3P62310 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM3P62310 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM3P62310 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.12■□□□□ 0.49
LSM3P62310 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM3P62310 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM3P62310 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM3P62310 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LSM3P62310 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
LSM3P62310 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM3P62310 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM3P62310 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM3P62310 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 YBX1P4-201ENST00000392794 808 ntBASIC18.12■□□□□ 0.49
LSM3P62310 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.12■□□□□ 0.49
LSM3P62310 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC18.12■□□□□ 0.49
LSM3P62310 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.12■□□□□ 0.49
LSM3P62310 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.12■□□□□ 0.49
LSM3P62310 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.12■□□□□ 0.49
LSM3P62310 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LSM3P62310 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM3P62310 Z82202.1-201ENST00000623446 1880 ntBASIC18.12■□□□□ 0.49
LSM3P62310 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
LSM3P62310 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.11■□□□□ 0.49
LSM3P62310 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
LSM3P62310 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LSM3P62310 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
LSM3P62310 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC18.11■□□□□ 0.49
LSM3P62310 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LSM3P62310 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.11■□□□□ 0.49
LSM3P62310 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.11■□□□□ 0.49
LSM3P62310 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.11■□□□□ 0.49
LSM3P62310 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM3P62310 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LSM3P62310 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
LSM3P62310 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.1■□□□□ 0.49
LSM3P62310 AL691432.2-201ENST00000607222 2038 ntBASIC18.1■□□□□ 0.49
LSM3P62310 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
LSM3P62310 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
LSM3P62310 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 TREX1-205ENST00000625293 1783 ntBASIC18.1■□□□□ 0.49
LSM3P62310 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.1■□□□□ 0.49
LSM3P62310 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 NTF6A-201ENST00000591175 560 ntBASIC18.1■□□□□ 0.49
LSM3P62310 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
LSM3P62310 AL031848.2-201ENST00000607670 837 ntBASIC18.1■□□□□ 0.49
LSM3P62310 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.1■□□□□ 0.49
LSM3P62310 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.1■□□□□ 0.49
LSM3P62310 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LSM3P62310 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM3P62310 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM3P62310 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM3P62310 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM3P62310 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.09■□□□□ 0.49
LSM3P62310 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM3P62310 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM3P62310 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LSM3P62310 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LSM3P62310 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LSM3P62310 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LSM3P62310 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
LSM3P62310 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms