Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC15.08■□□□□ 0
FOXA3P55318 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC15.08■□□□□ 0
FOXA3P55318 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC15.08■□□□□ 0
FOXA3P55318 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA3P55318 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC15.08■□□□□ 0
FOXA3P55318 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC15.08■□□□□ 0
FOXA3P55318 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC15.08■□□□□ 0
FOXA3P55318 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA3P55318 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC15.08■□□□□ 0
FOXA3P55318 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC15.08■□□□□ 0
FOXA3P55318 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC15.08■□□□□ 0
FOXA3P55318 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
FOXA3P55318 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC15.08■□□□□ 0
FOXA3P55318 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC15.08■□□□□ 0
FOXA3P55318 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
FOXA3P55318 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
FOXA3P55318 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC15.07■□□□□ 0
FOXA3P55318 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
FOXA3P55318 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 AC093484.2-201ENST00000580996 2166 ntBASIC15.07■□□□□ 0
FOXA3P55318 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC15.07■□□□□ 0
FOXA3P55318 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC15.07■□□□□ 0
FOXA3P55318 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC15.07■□□□□ 0
FOXA3P55318 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC15.07■□□□□ 0
FOXA3P55318 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 SMUG1P1-201ENST00000590640 811 ntBASIC15.07■□□□□ 0
FOXA3P55318 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC15.07■□□□□ 0
FOXA3P55318 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
FOXA3P55318 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 AC009237.3-201ENST00000393279 1427 ntBASIC15.07■□□□□ 0
FOXA3P55318 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 AC007613.1-201ENST00000572811 2597 ntBASIC15.07■□□□□ 0
FOXA3P55318 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC15.07■□□□□ 0
FOXA3P55318 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC15.07■□□□□ 0
FOXA3P55318 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC15.07■□□□□ 0
FOXA3P55318 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA3P55318 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
FOXA3P55318 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC15.06■□□□□ 0
FOXA3P55318 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
FOXA3P55318 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC15.06■□□□□ 0
FOXA3P55318 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
FOXA3P55318 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC15.06■□□□□ 0
FOXA3P55318 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC15.06■□□□□ 0
FOXA3P55318 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC15.06■□□□□ 0
FOXA3P55318 RNF146-206ENST00000480444 843 ntTSL 2 BASIC15.06■□□□□ 0
FOXA3P55318 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC15.06■□□□□ 0
FOXA3P55318 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC15.06■□□□□ 0
FOXA3P55318 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC15.06■□□□□ 0
FOXA3P55318 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
FOXA3P55318 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC15.06■□□□□ 0
FOXA3P55318 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC15.06■□□□□ 0
FOXA3P55318 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC15.06■□□□□ 0
FOXA3P55318 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA3P55318 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
FOXA3P55318 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
FOXA3P55318 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
FOXA3P55318 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
FOXA3P55318 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
FOXA3P55318 AC005082.1-201ENST00000413042 2259 ntBASIC15.05■□□□□ 0
FOXA3P55318 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
FOXA3P55318 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
FOXA3P55318 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
FOXA3P55318 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
FOXA3P55318 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC15.05■□□□□ -0
FOXA3P55318 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC15.05■□□□□ -0
FOXA3P55318 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms