Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A4P53420 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A4P53420 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A4P53420 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
COL4A4P53420 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.69■■□□□ 1.06
COL4A4P53420 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.69■■□□□ 1.06
COL4A4P53420 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.69■■□□□ 1.06
COL4A4P53420 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A4P53420 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A4P53420 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A4P53420 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
COL4A4P53420 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.69■■□□□ 1.06
COL4A4P53420 HTR7P1-201ENST00000538670 1336 ntBASIC21.69■■□□□ 1.06
COL4A4P53420 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.69■■□□□ 1.06
COL4A4P53420 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A4P53420 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC21.69■■□□□ 1.06
COL4A4P53420 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC21.69■■□□□ 1.06
COL4A4P53420 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.68■■□□□ 1.06
COL4A4P53420 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A4P53420 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A4P53420 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A4P53420 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
COL4A4P53420 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A4P53420 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC21.68■■□□□ 1.06
COL4A4P53420 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.68■■□□□ 1.06
COL4A4P53420 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A4P53420 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A4P53420 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.68■■□□□ 1.06
COL4A4P53420 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.68■■□□□ 1.06
COL4A4P53420 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A4P53420 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A4P53420 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A4P53420 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A4P53420 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A4P53420 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A4P53420 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A4P53420 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A4P53420 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.67■■□□□ 1.06
COL4A4P53420 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.67■■□□□ 1.06
COL4A4P53420 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A4P53420 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A4P53420 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
COL4A4P53420 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.67■■□□□ 1.06
COL4A4P53420 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.66■■□□□ 1.06
COL4A4P53420 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COL4A4P53420 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A4P53420 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.66■■□□□ 1.06
COL4A4P53420 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.66■■□□□ 1.06
COL4A4P53420 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC21.66■■□□□ 1.06
COL4A4P53420 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.66■■□□□ 1.06
COL4A4P53420 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A4P53420 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A4P53420 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.66■■□□□ 1.06
COL4A4P53420 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A4P53420 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A4P53420 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A4P53420 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A4P53420 AL049796.1-201ENST00000565336 1766 ntBASIC21.66■■□□□ 1.06
COL4A4P53420 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.66■■□□□ 1.06
COL4A4P53420 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.66■■□□□ 1.06
COL4A4P53420 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
COL4A4P53420 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COL4A4P53420 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC21.66■■□□□ 1.06
COL4A4P53420 NTF6B-201ENST00000591913 560 ntBASIC21.66■■□□□ 1.06
COL4A4P53420 AL121829.2-201ENST00000620908 328 ntBASIC21.66■■□□□ 1.06
COL4A4P53420 AL121906.2-201ENST00000621597 723 ntBASIC21.66■■□□□ 1.06
COL4A4P53420 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.66■■□□□ 1.06
COL4A4P53420 AC124283.5-201ENST00000624661 1809 ntBASIC21.65■■□□□ 1.06
COL4A4P53420 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A4P53420 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.65■■□□□ 1.06
COL4A4P53420 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A4P53420 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A4P53420 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A4P53420 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.65■■□□□ 1.06
COL4A4P53420 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A4P53420 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A4P53420 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A4P53420 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
COL4A4P53420 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
COL4A4P53420 DUX4L26-201ENST00000489078 1255 ntBASIC21.65■■□□□ 1.06
COL4A4P53420 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.65■■□□□ 1.06
COL4A4P53420 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.65■■□□□ 1.06
COL4A4P53420 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
COL4A4P53420 AL590326.2-201ENST00000625139 305 ntBASIC21.65■■□□□ 1.06
COL4A4P53420 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A4P53420 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL4A4P53420 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
COL4A4P53420 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL4A4P53420 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A4P53420 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A4P53420 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
COL4A4P53420 LINC01568-207ENST00000641790 1380 ntBASIC21.64■■□□□ 1.05
COL4A4P53420 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A4P53420 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A4P53420 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.64■■□□□ 1.05
COL4A4P53420 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A4P53420 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A4P53420 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A4P53420 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A4P53420 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms