Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLK1P49759 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CLK1P49759 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLK1P49759 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.82■□□□□ 0.6
CLK1P49759 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLK1P49759 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLK1P49759 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.82■□□□□ 0.6
CLK1P49759 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLK1P49759 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CLK1P49759 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLK1P49759 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLK1P49759 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLK1P49759 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CLK1P49759 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLK1P49759 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLK1P49759 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLK1P49759 AC018445.3-201ENST00000624177 1945 ntBASIC18.81■□□□□ 0.6
CLK1P49759 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLK1P49759 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.81■□□□□ 0.6
CLK1P49759 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.81■□□□□ 0.6
CLK1P49759 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLK1P49759 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.81■□□□□ 0.6
CLK1P49759 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CLK1P49759 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CLK1P49759 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CLK1P49759 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
CLK1P49759 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLK1P49759 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLK1P49759 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLK1P49759 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLK1P49759 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.8■□□□□ 0.6
CLK1P49759 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.8■□□□□ 0.6
CLK1P49759 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CLK1P49759 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLK1P49759 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLK1P49759 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.8■□□□□ 0.6
CLK1P49759 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.8■□□□□ 0.6
CLK1P49759 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
CLK1P49759 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CLK1P49759 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CLK1P49759 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLK1P49759 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CLK1P49759 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLK1P49759 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
CLK1P49759 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.8■□□□□ 0.6
CLK1P49759 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLK1P49759 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLK1P49759 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLK1P49759 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.79■□□□□ 0.6
CLK1P49759 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.79■□□□□ 0.6
CLK1P49759 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLK1P49759 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.79■□□□□ 0.6
CLK1P49759 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.79■□□□□ 0.6
CLK1P49759 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.79■□□□□ 0.6
CLK1P49759 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLK1P49759 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLK1P49759 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLK1P49759 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.79■□□□□ 0.6
CLK1P49759 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CLK1P49759 SLC7A5P2-201ENST00000553010 536 ntBASIC18.79■□□□□ 0.6
CLK1P49759 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLK1P49759 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLK1P49759 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CLK1P49759 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLK1P49759 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLK1P49759 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CLK1P49759 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLK1P49759 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CLK1P49759 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLK1P49759 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLK1P49759 AC027702.1-201ENST00000563810 1770 ntBASIC18.78■□□□□ 0.6
CLK1P49759 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.78■□□□□ 0.6
CLK1P49759 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLK1P49759 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CLK1P49759 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLK1P49759 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLK1P49759 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CLK1P49759 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLK1P49759 AC112907.3-201ENST00000577781 2400 ntBASIC18.78■□□□□ 0.6
CLK1P49759 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLK1P49759 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.78■□□□□ 0.6
CLK1P49759 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.78■□□□□ 0.6
CLK1P49759 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLK1P49759 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
CLK1P49759 AC245052.3-201ENST00000450182 901 ntBASIC18.78■□□□□ 0.6
CLK1P49759 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.78■□□□□ 0.6
CLK1P49759 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.78■□□□□ 0.6
CLK1P49759 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
CLK1P49759 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.78■□□□□ 0.6
CLK1P49759 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.78■□□□□ 0.6
CLK1P49759 AC137761.2-201ENST00000561729 223 ntBASIC18.78■□□□□ 0.6
CLK1P49759 AC145350.3-201ENST00000569033 163 ntBASIC18.78■□□□□ 0.6
CLK1P49759 AC243732.1-201ENST00000612648 864 ntBASIC18.78■□□□□ 0.6
CLK1P49759 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CLK1P49759 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CLK1P49759 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLK1P49759 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLK1P49759 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CLK1P49759 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLK1P49759 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms