Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.24■□□□□ 0.99
BDNFP23560 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
BDNFP23560 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
BDNFP23560 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.24■□□□□ 0.99
BDNFP23560 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.24■□□□□ 0.99
BDNFP23560 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.24■□□□□ 0.99
BDNFP23560 DPP3P2-201ENST00000416030 1696 ntBASIC21.24■□□□□ 0.99
BDNFP23560 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 AC092720.2-201ENST00000602388 1665 ntBASIC21.24■□□□□ 0.99
BDNFP23560 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.24■□□□□ 0.99
BDNFP23560 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.24■□□□□ 0.99
BDNFP23560 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.24■□□□□ 0.99
BDNFP23560 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BDNFP23560 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
BDNFP23560 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.23■□□□□ 0.99
BDNFP23560 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.23■□□□□ 0.99
BDNFP23560 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
BDNFP23560 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BDNFP23560 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
BDNFP23560 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.23■□□□□ 0.99
BDNFP23560 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.23■□□□□ 0.99
BDNFP23560 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
BDNFP23560 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BDNFP23560 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BDNFP23560 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.23■□□□□ 0.99
BDNFP23560 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BDNFP23560 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.23■□□□□ 0.99
BDNFP23560 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BDNFP23560 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BDNFP23560 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
BDNFP23560 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
BDNFP23560 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
BDNFP23560 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BDNFP23560 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
BDNFP23560 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
BDNFP23560 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.22■□□□□ 0.99
BDNFP23560 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.22■□□□□ 0.99
BDNFP23560 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.22■□□□□ 0.99
BDNFP23560 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.22■□□□□ 0.99
BDNFP23560 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.22■□□□□ 0.99
BDNFP23560 RN7SL471P-201ENST00000580476 299 ntBASIC21.22■□□□□ 0.99
BDNFP23560 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
BDNFP23560 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
BDNFP23560 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.21■□□□□ 0.99
BDNFP23560 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BDNFP23560 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BDNFP23560 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BDNFP23560 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BDNFP23560 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
BDNFP23560 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.21■□□□□ 0.99
BDNFP23560 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
BDNFP23560 C1QBPP2-201ENST00000528754 825 ntBASIC21.21■□□□□ 0.99
BDNFP23560 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.21■□□□□ 0.99
BDNFP23560 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BDNFP23560 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
BDNFP23560 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
BDNFP23560 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BDNFP23560 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BDNFP23560 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
BDNFP23560 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.21■□□□□ 0.99
BDNFP23560 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.2■□□□□ 0.99
BDNFP23560 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.2■□□□□ 0.99
BDNFP23560 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.2■□□□□ 0.98
BDNFP23560 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
BDNFP23560 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
BDNFP23560 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.2■□□□□ 0.98
BDNFP23560 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
BDNFP23560 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
BDNFP23560 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
BDNFP23560 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
BDNFP23560 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
BDNFP23560 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
BDNFP23560 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms