Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.46■□□□□ 0.71
COL5A1P20908 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A1P20908 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.46■□□□□ 0.71
COL5A1P20908 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A1P20908 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A1P20908 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A1P20908 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
COL5A1P20908 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A1P20908 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A1P20908 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A1P20908 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
COL5A1P20908 KRT16P1-201ENST00000399124 1418 ntBASIC19.46■□□□□ 0.71
COL5A1P20908 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
COL5A1P20908 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.46■□□□□ 0.71
COL5A1P20908 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.46■□□□□ 0.71
COL5A1P20908 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A1P20908 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.46■□□□□ 0.71
COL5A1P20908 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A1P20908 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.46■□□□□ 0.71
COL5A1P20908 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
COL5A1P20908 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A1P20908 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
COL5A1P20908 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A1P20908 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A1P20908 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A1P20908 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.45■□□□□ 0.7
COL5A1P20908 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
COL5A1P20908 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A1P20908 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A1P20908 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A1P20908 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.45■□□□□ 0.7
COL5A1P20908 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.45■□□□□ 0.7
COL5A1P20908 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.45■□□□□ 0.7
COL5A1P20908 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.45■□□□□ 0.7
COL5A1P20908 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.45■□□□□ 0.7
COL5A1P20908 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.45■□□□□ 0.7
COL5A1P20908 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A1P20908 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.45■□□□□ 0.7
COL5A1P20908 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A1P20908 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A1P20908 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A1P20908 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A1P20908 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
COL5A1P20908 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.45■□□□□ 0.7
COL5A1P20908 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A1P20908 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A1P20908 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A1P20908 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.44■□□□□ 0.7
COL5A1P20908 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.44■□□□□ 0.7
COL5A1P20908 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A1P20908 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.44■□□□□ 0.7
COL5A1P20908 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A1P20908 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A1P20908 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A1P20908 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A1P20908 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A1P20908 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A1P20908 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL5A1P20908 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.44■□□□□ 0.7
COL5A1P20908 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.44■□□□□ 0.7
COL5A1P20908 AP000525.1-201ENST00000608286 694 ntBASIC19.44■□□□□ 0.7
COL5A1P20908 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A1P20908 AC011484.1-201ENST00000377652 1995 ntBASIC19.43■□□□□ 0.7
COL5A1P20908 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A1P20908 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.43■□□□□ 0.7
COL5A1P20908 PTBP1P-201ENST00000554374 1601 ntBASIC19.43■□□□□ 0.7
COL5A1P20908 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A1P20908 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.43■□□□□ 0.7
COL5A1P20908 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A1P20908 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A1P20908 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A1P20908 AC005521.1-201ENST00000393351 872 ntBASIC19.43■□□□□ 0.7
COL5A1P20908 KSR1P1-201ENST00000446298 240 ntBASIC19.43■□□□□ 0.7
COL5A1P20908 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A1P20908 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
COL5A1P20908 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A1P20908 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A1P20908 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
COL5A1P20908 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.43■□□□□ 0.7
COL5A1P20908 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.42■□□□□ 0.7
COL5A1P20908 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.42■□□□□ 0.7
COL5A1P20908 AL390955.1-201ENST00000428694 934 ntBASIC19.42■□□□□ 0.7
COL5A1P20908 AP002982.1-201ENST00000492365 877 ntBASIC19.42■□□□□ 0.7
COL5A1P20908 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.42■□□□□ 0.7
COL5A1P20908 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.42■□□□□ 0.7
COL5A1P20908 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.42■□□□□ 0.7
COL5A1P20908 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A1P20908 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.42■□□□□ 0.7
COL5A1P20908 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.42■□□□□ 0.7
COL5A1P20908 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.42■□□□□ 0.7
COL5A1P20908 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.42■□□□□ 0.7
COL5A1P20908 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
COL5A1P20908 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.41■□□□□ 0.7
COL5A1P20908 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.41■□□□□ 0.7
COL5A1P20908 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.41■□□□□ 0.7
COL5A1P20908 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.41■□□□□ 0.7
COL5A1P20908 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
COL5A1P20908 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A1P20908 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.41■□□□□ 0.7
COL5A1P20908 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms