Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CCNK-206ENST00000555942 206 ntTSL 38.88□□□□□ -0.991e-6■■■□□ 16
YBX3P16989 CRTAP-203ENST00000485310 562 ntTSL 48.6□□□□□ -1.037e-15■■■□□ 16
YBX3P16989 GON4L-202ENST00000361040 5118 ntTSL 1 (best) BASIC11.03□□□□□ -0.641e-9■■■□□ 16
YBX3P16989 GON4L-207ENST00000467009 1831 ntTSL 29.59□□□□□ -0.871e-9■■■□□ 16
YBX3P16989 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC8.97□□□□□ -0.971e-9■■■□□ 16
YBX3P16989 GON4L-219ENST00000622608 4801 ntTSL 5 BASIC8.72□□□□□ -1.011e-9■■■□□ 16
YBX3P16989 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.021e-9■■■□□ 16
YBX3P16989 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.051e-9■■■□□ 16
YBX3P16989 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC7.57□□□□□ -1.21e-9■■■□□ 16
YBX3P16989 GON4L-209ENST00000471341 5097 ntTSL 27.33□□□□□ -1.241e-9■■■□□ 16
YBX3P16989 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC7.03□□□□□ -1.281e-9■■■□□ 16
YBX3P16989 POGZ-203ENST00000368863 6054 ntTSL 1 (best) BASIC9.79□□□□□ -0.841e-6■■■□□ 16
YBX3P16989 POGZ-201ENST00000271715 6626 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.041e-6■■■□□ 16
YBX3P16989 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC7.01□□□□□ -1.291e-6■■■□□ 16
YBX3P16989 POGZ-202ENST00000358476 6459 ntTSL 26.13□□□□□ -1.431e-6■■■□□ 16
YBX3P16989 FBXW11-212ENST00000523843 2099 ntTSL 523.25■■□□□ 1.312e-6■■■□□ 16
YBX3P16989 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC22.91■■□□□ 1.262e-6■■■□□ 16
YBX3P16989 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.492e-6■■■□□ 16
YBX3P16989 FBXW11-201ENST00000265094 4342 ntTSL 1 (best) BASIC13.16□□□□□ -0.32e-6■■■□□ 16
YBX3P16989 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.593e-6■■■□□ 16
YBX3P16989 ZNF280B-202ENST00000619852 3981 ntTSL 1 (best)10.49□□□□□ -0.733e-6■■■□□ 16
YBX3P16989 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.383e-6■■■□□ 16
YBX3P16989 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.075e-10■■■□□ 16
YBX3P16989 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.471e-9■■■□□ 16
YBX3P16989 EIF4A2-218ENST00000475653 909 ntTSL 29.25□□□□□ -0.931e-14■■■□□ 16
YBX3P16989 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.55□□□□□ -1.368e-8■■■□□ 16
YBX3P16989 AK1-201ENST00000223836 736 ntTSL 3 BASIC29.1■■■□□ 2.259e-7■■■□□ 16
YBX3P16989 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.799e-7■■■□□ 16
YBX3P16989 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.749e-7■■■□□ 16
YBX3P16989 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC18.84■□□□□ 0.619e-7■■■□□ 16
YBX3P16989 AK1-204ENST00000413016 525 ntTSL 516.47■□□□□ 0.239e-7■■■□□ 16
YBX3P16989 AK1-205ENST00000550143 532 ntTSL 515□□□□□ -0.019e-7■■■□□ 16
YBX3P16989 SLBP-203ENST00000480936 558 ntTSL 432.07■■■□□ 2.721e-8■■■□□ 16
YBX3P16989 SLBP-205ENST00000488267 987 ntTSL 2 BASIC22.1■■□□□ 1.131e-8■■■□□ 16
YBX3P16989 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC25.49■■□□□ 1.672e-17■■■□□ 16
YBX3P16989 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.13■□□□□ 0.654e-12■■■□□ 16
YBX3P16989 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.334e-12■■■□□ 16
YBX3P16989 SMARCD1-207ENST00000549526 401 ntTSL 512.65□□□□□ -0.384e-12■■■□□ 16
YBX3P16989 SMARCD1-205ENST00000548573 2095 ntTSL 5 BASIC10□□□□□ -0.814e-12■■■□□ 16
YBX3P16989 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.682e-6■■■□□ 16
YBX3P16989 UBE2N-205ENST00000550657 3018 ntTSL 2 BASIC9.42□□□□□ -0.92e-6■■■□□ 16
YBX3P16989 RNH1-210ENST00000525701 1794 ntTSL 525.49■■□□□ 1.677e-7■■■□□ 16
YBX3P16989 RNH1-213ENST00000528713 1202 ntTSL 1 (best)24.72■■□□□ 1.557e-7■■■□□ 16
YBX3P16989 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.517e-7■■■□□ 16
YBX3P16989 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.57e-7■■■□□ 16
YBX3P16989 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.497e-7■■■□□ 16
YBX3P16989 RNH1-207ENST00000524464 624 ntTSL 522.68■■□□□ 1.227e-7■■■□□ 16
YBX3P16989 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.927e-7■■■□□ 16
YBX3P16989 RNH1-214ENST00000529115 855 ntTSL 320.41■□□□□ 0.867e-7■■■□□ 16
YBX3P16989 RNH1-218ENST00000531149 709 ntTSL 319.2■□□□□ 0.667e-7■■■□□ 16
YBX3P16989 RNH1-208ENST00000524780 1059 ntTSL 217.04■□□□□ 0.327e-7■■■□□ 16
YBX3P16989 UBL4A-203ENST00000417913 743 ntTSL 523.39■■□□□ 1.332e-7■■■□□ 16
YBX3P16989 RPL13-208ENST00000487034 615 ntTSL 1 (best)30.12■■■□□ 2.413e-85■■■□□ 16
YBX3P16989 WDR1-218ENST00000515743 4482 ntTSL 512.33□□□□□ -0.441e-7■■■□□ 16
YBX3P16989 PCTP-203ENST00000417982 2234 ntTSL 221.65■■□□□ 1.061e-6■■■□□ 16
YBX3P16989 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.61e-6■■■□□ 16
YBX3P16989 PCTP-206ENST00000573500 919 ntTSL 3 BASIC17.2■□□□□ 0.341e-6■■■□□ 16
YBX3P16989 PCTP-202ENST00000325214 1856 ntTSL 1 (best) BASIC16.2■□□□□ 0.181e-6■■■□□ 16
YBX3P16989 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.82□□□□□ -0.041e-6■■■□□ 16
YBX3P16989 PCTP-208ENST00000576221 609 ntTSL 59.95□□□□□ -0.821e-6■■■□□ 16
YBX3P16989 PCTP-204ENST00000571489 3932 ntTSL 1 (best)7.77□□□□□ -1.171e-6■■■□□ 16
YBX3P16989 EIF3L-206ENST00000439997 787 ntTSL 59.03□□□□□ -0.968e-11■■■□□ 16
YBX3P16989 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.091e-9■■■□□ 16
YBX3P16989 KIAA0141-202ENST00000432126 4970 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.671e-9■■■□□ 16
YBX3P16989 CINP-206ENST00000559504 1781 ntTSL 1 (best)14.84□□□□□ -0.034e-8■■■□□ 16
YBX3P16989 CINP-201ENST00000216756 955 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.064e-8■■■□□ 16
YBX3P16989 CINP-202ENST00000536961 845 ntTSL 3 BASIC13.06□□□□□ -0.324e-8■■■□□ 16
YBX3P16989 CINP-207ENST00000559514 4270 ntTSL 210.21□□□□□ -0.784e-8■■■□□ 16
YBX3P16989 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.568e-21■■■□□ 16
YBX3P16989 SNRPD2-203ENST00000585392 379 ntTSL 3 BASIC16.57■□□□□ 0.248e-21■■■□□ 16
YBX3P16989 SNRPD2-204ENST00000587367 596 ntTSL 3 BASIC14.39□□□□□ -0.118e-21■■■□□ 16
YBX3P16989 SNRPD2-202ENST00000391932 615 ntTSL 2 BASIC14.15□□□□□ -0.148e-21■■■□□ 16
YBX3P16989 SNRPD2-208ENST00000590212 454 ntTSL 3 BASIC14.04□□□□□ -0.168e-21■■■□□ 16
YBX3P16989 SNRPD2-201ENST00000342669 901 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.28e-21■■■□□ 16
YBX3P16989 RPL19-203ENST00000577759 564 nt13.66□□□□□ -0.225e-49■■■□□ 16
YBX3P16989 LRBA-208ENST00000510157 1636 ntTSL 516.85■□□□□ 0.291e-7■■■□□ 16
YBX3P16989 LRBA-213ENST00000515096 2914 ntTSL 1 (best)7.81□□□□□ -1.161e-7■■■□□ 16
YBX3P16989 TRANK1-201ENST00000429976 10481 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.81e-6■■■□□ 16
YBX3P16989 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.46e-6■■■□□ 16
YBX3P16989 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC29.48■■■□□ 2.311e-7■■■□□ 16
YBX3P16989 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC28.62■■■□□ 2.171e-7■■■□□ 16
YBX3P16989 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC25.48■■□□□ 1.671e-7■■■□□ 16
YBX3P16989 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC25.06■■□□□ 1.61e-7■■■□□ 16
YBX3P16989 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC24.93■■□□□ 1.581e-7■■■□□ 16
YBX3P16989 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC24.28■■□□□ 1.481e-7■■■□□ 16
YBX3P16989 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC22.51■■□□□ 1.191e-7■■■□□ 16
YBX3P16989 LY6E-204ENST00000519546 971 ntTSL 2 BASIC21.12■□□□□ 0.971e-7■■■□□ 16
YBX3P16989 LY6E-215ENST00000523847 427 ntTSL 3 BASIC17.68■□□□□ 0.421e-7■■■□□ 16
YBX3P16989 SMC1A-204ENST00000463684 880 ntTSL 220.48■□□□□ 0.874e-9■■■□□ 16
YBX3P16989 CTCFL-219ENST00000608720 2241 ntTSL 1 (best)15.07■□□□□ 02e-8■■■□□ 16
YBX3P16989 CTCFL-213ENST00000607923 2964 ntTSL 1 (best)14.06□□□□□ -0.162e-8■■■□□ 16
YBX3P16989 CTCFL-220ENST00000608858 905 ntTSL 1 (best)13.81□□□□□ -0.22e-8■■■□□ 16
YBX3P16989 CTCFL-214ENST00000608108 1628 ntTSL 1 (best)13.44□□□□□ -0.262e-8■■■□□ 16
YBX3P16989 EIF4G1-226ENST00000450424 2658 ntTSL 518.51■□□□□ 0.554e-9■■■□□ 16
YBX3P16989 EIF4G1-210ENST00000421110 2755 ntTSL 517.95■□□□□ 0.464e-9■■■□□ 16
YBX3P16989 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.326e-9■■■□□ 16
YBX3P16989 ZNHIT1-203ENST00000485387 2898 ntTSL 1 (best)15.02■□□□□ -06e-9■■■□□ 16
YBX3P16989 ARHGAP4-224ENST00000494813 1939 ntTSL 522.79■■□□□ 1.242e-7■■■□□ 16
YBX3P16989 TM9SF4-201ENST00000217315 4032 ntTSL 2 BASIC12.7□□□□□ -0.381e-6■■■□□ 16
YBX3P16989 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.251e-6■■■□□ 16
Retrieved 100 of 29,075 protein–RNA pairs in 485.6 ms