Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A3P12111 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A3P12111 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A3P12111 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
COL6A3P12111 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.22■□□□□ 0.99
COL6A3P12111 AC097488.1-201ENST00000507834 756 ntBASIC21.22■□□□□ 0.99
COL6A3P12111 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC21.22■□□□□ 0.99
COL6A3P12111 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.22■□□□□ 0.99
COL6A3P12111 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL6A3P12111 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
COL6A3P12111 FAAHP1-202ENST00000446499 1238 ntBASIC21.21■□□□□ 0.99
COL6A3P12111 AP002469.2-201ENST00000531724 424 ntBASIC21.21■□□□□ 0.99
COL6A3P12111 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.21■□□□□ 0.99
COL6A3P12111 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL6A3P12111 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL6A3P12111 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.21■□□□□ 0.99
COL6A3P12111 TEX30-205ENST00000376029 959 ntTSL 2 BASIC21.21■□□□□ 0.99
COL6A3P12111 FAM220CP-201ENST00000395253 831 ntBASIC21.21■□□□□ 0.99
COL6A3P12111 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL6A3P12111 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC21.21■□□□□ 0.99
COL6A3P12111 SLC25A6P4-201ENST00000586535 553 ntBASIC21.21■□□□□ 0.99
COL6A3P12111 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.21■□□□□ 0.99
COL6A3P12111 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
COL6A3P12111 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.21■□□□□ 0.99
COL6A3P12111 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.2■□□□□ 0.98
COL6A3P12111 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.2■□□□□ 0.98
COL6A3P12111 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.2■□□□□ 0.98
COL6A3P12111 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL6A3P12111 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.2■□□□□ 0.98
COL6A3P12111 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL6A3P12111 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL6A3P12111 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
COL6A3P12111 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
COL6A3P12111 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL6A3P12111 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL6A3P12111 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.2■□□□□ 0.98
COL6A3P12111 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.2■□□□□ 0.98
COL6A3P12111 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.2■□□□□ 0.98
COL6A3P12111 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL6A3P12111 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL6A3P12111 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.19■□□□□ 0.98
COL6A3P12111 AL732292.2-201ENST00000609649 430 ntBASIC21.19■□□□□ 0.98
COL6A3P12111 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
COL6A3P12111 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL6A3P12111 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL6A3P12111 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.19■□□□□ 0.98
COL6A3P12111 PMS2P1-201ENST00000431037 1228 ntBASIC21.19■□□□□ 0.98
COL6A3P12111 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL6A3P12111 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.18■□□□□ 0.98
COL6A3P12111 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.18■□□□□ 0.98
COL6A3P12111 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.18■□□□□ 0.98
COL6A3P12111 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A3P12111 AC106795.1-205ENST00000512851 1056 ntBASIC21.18■□□□□ 0.98
COL6A3P12111 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A3P12111 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A3P12111 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
COL6A3P12111 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.18■□□□□ 0.98
COL6A3P12111 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A3P12111 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.18■□□□□ 0.98
COL6A3P12111 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
COL6A3P12111 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC21.18■□□□□ 0.98
COL6A3P12111 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COL6A3P12111 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC21.18■□□□□ 0.98
COL6A3P12111 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A3P12111 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A3P12111 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL6A3P12111 HOMER2P1-201ENST00000455653 964 ntBASIC21.17■□□□□ 0.98
COL6A3P12111 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
COL6A3P12111 MIR3180-1-201ENST00000580374 94 ntBASIC21.17■□□□□ 0.98
COL6A3P12111 MIR3180-3-201ENST00000584616 94 ntBASIC21.17■□□□□ 0.98
COL6A3P12111 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.17■□□□□ 0.98
COL6A3P12111 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A3P12111 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A3P12111 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.17■□□□□ 0.98
COL6A3P12111 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A3P12111 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A3P12111 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.16■□□□□ 0.98
COL6A3P12111 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.16■□□□□ 0.98
COL6A3P12111 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
COL6A3P12111 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL6A3P12111 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL6A3P12111 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
COL6A3P12111 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.16■□□□□ 0.98
COL6A3P12111 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL6A3P12111 LINC01124-201ENST00000409786 2117 ntBASIC21.16■□□□□ 0.98
COL6A3P12111 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.16■□□□□ 0.98
COL6A3P12111 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL6A3P12111 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC21.16■□□□□ 0.98
COL6A3P12111 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.16■□□□□ 0.98
COL6A3P12111 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL6A3P12111 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL6A3P12111 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
COL6A3P12111 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL6A3P12111 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.15■□□□□ 0.98
COL6A3P12111 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL6A3P12111 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
COL6A3P12111 AC120114.3-201ENST00000611923 658 ntBASIC21.15■□□□□ 0.98
COL6A3P12111 NME4-212ENST00000621774 904 ntTSL 3 BASIC21.15■□□□□ 0.98
COL6A3P12111 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
COL6A3P12111 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms