Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VIMP08670 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VIMP08670 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VIMP08670 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VIMP08670 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VIMP08670 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
VIMP08670 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.18■□□□□ 0.82
VIMP08670 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VIMP08670 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.18■□□□□ 0.82
VIMP08670 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
VIMP08670 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VIMP08670 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
VIMP08670 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.18■□□□□ 0.82
VIMP08670 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VIMP08670 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
VIMP08670 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.17■□□□□ 0.82
VIMP08670 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
VIMP08670 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.17■□□□□ 0.82
VIMP08670 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VIMP08670 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VIMP08670 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VIMP08670 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.17■□□□□ 0.82
VIMP08670 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VIMP08670 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.17■□□□□ 0.82
VIMP08670 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.17■□□□□ 0.82
VIMP08670 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
VIMP08670 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VIMP08670 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.17■□□□□ 0.82
VIMP08670 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VIMP08670 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VIMP08670 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VIMP08670 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VIMP08670 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VIMP08670 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VIMP08670 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
VIMP08670 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.16■□□□□ 0.82
VIMP08670 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VIMP08670 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VIMP08670 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VIMP08670 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.16■□□□□ 0.82
VIMP08670 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.16■□□□□ 0.82
VIMP08670 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.16■□□□□ 0.82
VIMP08670 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VIMP08670 AC092171.4-201ENST00000609130 632 ntBASIC20.16■□□□□ 0.82
VIMP08670 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VIMP08670 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
VIMP08670 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VIMP08670 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.16■□□□□ 0.82
VIMP08670 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
VIMP08670 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VIMP08670 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VIMP08670 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.16■□□□□ 0.82
VIMP08670 AL691432.2-201ENST00000607222 2038 ntBASIC20.15■□□□□ 0.82
VIMP08670 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.15■□□□□ 0.82
VIMP08670 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
VIMP08670 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
VIMP08670 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
VIMP08670 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.15■□□□□ 0.82
VIMP08670 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.15■□□□□ 0.82
VIMP08670 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 SYT6-210ENST00000641643 1587 ntBASIC20.15■□□□□ 0.82
VIMP08670 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
VIMP08670 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
VIMP08670 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
VIMP08670 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.15■□□□□ 0.82
VIMP08670 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VIMP08670 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.15■□□□□ 0.82
VIMP08670 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.15■□□□□ 0.82
VIMP08670 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
VIMP08670 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VIMP08670 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
VIMP08670 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
VIMP08670 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VIMP08670 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VIMP08670 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VIMP08670 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VIMP08670 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VIMP08670 Z82202.1-201ENST00000623446 1880 ntBASIC20.14■□□□□ 0.81
VIMP08670 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.14■□□□□ 0.81
VIMP08670 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VIMP08670 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.14■□□□□ 0.81
VIMP08670 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VIMP08670 SLC47A1P1-202ENST00000449666 945 ntBASIC20.14■□□□□ 0.81
VIMP08670 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.14■□□□□ 0.81
VIMP08670 RARRES2P1-201ENST00000474487 481 ntBASIC20.14■□□□□ 0.81
VIMP08670 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.14■□□□□ 0.81
VIMP08670 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.14■□□□□ 0.81
VIMP08670 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms