Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB3O15347 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HMGB3O15347 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
HMGB3O15347 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB3O15347 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HMGB3O15347 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB3O15347 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB3O15347 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HMGB3O15347 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB3O15347 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB3O15347 OR2I1P-207ENST00000453522 948 ntBASIC16.19■□□□□ 0.18
HMGB3O15347 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HMGB3O15347 AC012354.3-201ENST00000623734 483 ntBASIC16.19■□□□□ 0.18
HMGB3O15347 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB3O15347 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB3O15347 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB3O15347 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB3O15347 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB3O15347 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 AL158211.5-201ENST00000623583 2518 ntBASIC16.18■□□□□ 0.18
HMGB3O15347 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC16.18■□□□□ 0.18
HMGB3O15347 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB3O15347 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HMGB3O15347 AP000974.1-201ENST00000623909 2387 ntBASIC16.18■□□□□ 0.18
HMGB3O15347 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HMGB3O15347 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB3O15347 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
HMGB3O15347 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB3O15347 MIR4787-201ENST00000607364 84 ntBASIC16.18■□□□□ 0.18
HMGB3O15347 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HMGB3O15347 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HMGB3O15347 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 GATM-206ENST00000558336 1522 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB3O15347 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB3O15347 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB3O15347 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
HMGB3O15347 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HMGB3O15347 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.17■□□□□ 0.18
HMGB3O15347 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
HMGB3O15347 AC004408.2-201ENST00000623613 2777 ntBASIC16.17■□□□□ 0.18
HMGB3O15347 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB3O15347 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 MIR3181-201ENST00000578512 73 ntBASIC16.17■□□□□ 0.18
HMGB3O15347 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC16.17■□□□□ 0.18
HMGB3O15347 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HMGB3O15347 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB3O15347 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
HMGB3O15347 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HMGB3O15347 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB3O15347 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB3O15347 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HMGB3O15347 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGB3O15347 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
HMGB3O15347 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGB3O15347 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC16.16■□□□□ 0.18
HMGB3O15347 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HMGB3O15347 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
HMGB3O15347 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGB3O15347 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGB3O15347 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms