Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PMS2P1-201ENST00000431037 1228 ntBASIC20.73■□□□□ 0.91
TTC28Q96AY4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.73■□□□□ 0.91
TTC28Q96AY4 AC097488.1-201ENST00000507834 756 ntBASIC20.73■□□□□ 0.91
TTC28Q96AY4 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.73■□□□□ 0.91
TTC28Q96AY4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.73■□□□□ 0.91
TTC28Q96AY4 HYMAI.1-201ENST00000620949 238 ntBASIC20.73■□□□□ 0.91
TTC28Q96AY4 FSCN1P1-201ENST00000568912 1481 ntBASIC20.73■□□□□ 0.91
TTC28Q96AY4 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
TTC28Q96AY4 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TTC28Q96AY4 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TTC28Q96AY4 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.73■□□□□ 0.91
TTC28Q96AY4 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TTC28Q96AY4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TTC28Q96AY4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.72■□□□□ 0.91
TTC28Q96AY4 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
TTC28Q96AY4 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.72■□□□□ 0.91
TTC28Q96AY4 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
TTC28Q96AY4 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TTC28Q96AY4 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TTC28Q96AY4 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.72■□□□□ 0.91
TTC28Q96AY4 AC004870.1-201ENST00000315132 882 ntBASIC20.72■□□□□ 0.91
TTC28Q96AY4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TTC28Q96AY4 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.72■□□□□ 0.91
TTC28Q96AY4 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC20.72■□□□□ 0.91
TTC28Q96AY4 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
TTC28Q96AY4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TTC28Q96AY4 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.72■□□□□ 0.91
TTC28Q96AY4 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.72■□□□□ 0.91
TTC28Q96AY4 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TTC28Q96AY4 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TTC28Q96AY4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TTC28Q96AY4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TTC28Q96AY4 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TTC28Q96AY4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TTC28Q96AY4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.71■□□□□ 0.91
TTC28Q96AY4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TTC28Q96AY4 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
TTC28Q96AY4 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.71■□□□□ 0.91
TTC28Q96AY4 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TTC28Q96AY4 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TTC28Q96AY4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TTC28Q96AY4 IFNL4P1-201ENST00000607083 540 ntBASIC20.71■□□□□ 0.91
TTC28Q96AY4 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TTC28Q96AY4 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TTC28Q96AY4 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.71■□□□□ 0.91
TTC28Q96AY4 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TTC28Q96AY4 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TTC28Q96AY4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TTC28Q96AY4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TTC28Q96AY4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.7■□□□□ 0.9
TTC28Q96AY4 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.7■□□□□ 0.9
TTC28Q96AY4 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TTC28Q96AY4 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
TTC28Q96AY4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
TTC28Q96AY4 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.7■□□□□ 0.9
TTC28Q96AY4 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
TTC28Q96AY4 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TTC28Q96AY4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.7■□□□□ 0.9
TTC28Q96AY4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
TTC28Q96AY4 MIR3180-1-201ENST00000580374 94 ntBASIC20.7■□□□□ 0.9
TTC28Q96AY4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.7■□□□□ 0.9
TTC28Q96AY4 MIR3180-3-201ENST00000584616 94 ntBASIC20.7■□□□□ 0.9
TTC28Q96AY4 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TTC28Q96AY4 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TTC28Q96AY4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
TTC28Q96AY4 AC007663.1-201ENST00000438948 1240 ntBASIC20.69■□□□□ 0.9
TTC28Q96AY4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.69■□□□□ 0.9
TTC28Q96AY4 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.69■□□□□ 0.9
TTC28Q96AY4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.69■□□□□ 0.9
TTC28Q96AY4 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TTC28Q96AY4 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TTC28Q96AY4 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TTC28Q96AY4 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TTC28Q96AY4 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.69■□□□□ 0.9
TTC28Q96AY4 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.69■□□□□ 0.9
TTC28Q96AY4 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
TTC28Q96AY4 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TTC28Q96AY4 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TTC28Q96AY4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TTC28Q96AY4 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
TTC28Q96AY4 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TTC28Q96AY4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TTC28Q96AY4 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TTC28Q96AY4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.68■□□□□ 0.9
TTC28Q96AY4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TTC28Q96AY4 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TTC28Q96AY4 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.68■□□□□ 0.9
TTC28Q96AY4 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.68■□□□□ 0.9
TTC28Q96AY4 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TTC28Q96AY4 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TTC28Q96AY4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.68■□□□□ 0.9
TTC28Q96AY4 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.68■□□□□ 0.9
TTC28Q96AY4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.68■□□□□ 0.9
TTC28Q96AY4 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
TTC28Q96AY4 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TTC28Q96AY4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TTC28Q96AY4 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TTC28Q96AY4 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.68■□□□□ 0.9
TTC28Q96AY4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.68■□□□□ 0.9
TTC28Q96AY4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms