Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.51
COL1A1P02452 TSPY7P-201ENST00000431358 1114 ntBASIC24.45■■□□□ 1.51
COL1A1P02452 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.51
COL1A1P02452 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC24.45■■□□□ 1.51
COL1A1P02452 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.51
COL1A1P02452 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC24.45■■□□□ 1.51
COL1A1P02452 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
COL1A1P02452 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC24.45■■□□□ 1.51
COL1A1P02452 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.51
COL1A1P02452 AP001412.1-201ENST00000608405 714 ntBASIC24.45■■□□□ 1.51
COL1A1P02452 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC24.45■■□□□ 1.51
COL1A1P02452 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC24.45■■□□□ 1.51
COL1A1P02452 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC24.45■■□□□ 1.5
COL1A1P02452 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC24.45■■□□□ 1.5
COL1A1P02452 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
COL1A1P02452 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL1A1P02452 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
COL1A1P02452 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL1A1P02452 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL1A1P02452 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
COL1A1P02452 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
COL1A1P02452 MIR4785-201ENST00000585005 73 ntBASIC24.45■■□□□ 1.5
COL1A1P02452 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC24.44■■□□□ 1.5
COL1A1P02452 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC24.44■■□□□ 1.5
COL1A1P02452 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL1A1P02452 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL1A1P02452 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL1A1P02452 KRASP1-201ENST00000407852 552 ntBASIC24.44■■□□□ 1.5
COL1A1P02452 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
COL1A1P02452 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC24.44■■□□□ 1.5
COL1A1P02452 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC24.44■■□□□ 1.5
COL1A1P02452 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC24.44■■□□□ 1.5
COL1A1P02452 Six3os1_6.1-201ENST00000620790 196 ntBASIC24.44■■□□□ 1.5
COL1A1P02452 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC24.44■■□□□ 1.5
COL1A1P02452 H19-201ENST00000411754 1788 ntTSL 5 BASIC24.43■■□□□ 1.5
COL1A1P02452 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
COL1A1P02452 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC24.43■■□□□ 1.5
COL1A1P02452 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL1A1P02452 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL1A1P02452 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC24.43■■□□□ 1.5
COL1A1P02452 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL1A1P02452 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
COL1A1P02452 AL390719.1-204ENST00000412397 1219 ntBASIC24.43■■□□□ 1.5
COL1A1P02452 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC24.43■■□□□ 1.5
COL1A1P02452 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL1A1P02452 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC24.43■■□□□ 1.5
COL1A1P02452 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
COL1A1P02452 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL1A1P02452 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL1A1P02452 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL1A1P02452 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL1A1P02452 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL1A1P02452 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC24.42■■□□□ 1.5
COL1A1P02452 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC24.42■■□□□ 1.5
COL1A1P02452 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL1A1P02452 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL1A1P02452 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC24.42■■□□□ 1.5
COL1A1P02452 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC24.42■■□□□ 1.5
COL1A1P02452 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC24.42■■□□□ 1.5
COL1A1P02452 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
COL1A1P02452 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
COL1A1P02452 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL1A1P02452 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL1A1P02452 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL1A1P02452 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL1A1P02452 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC24.41■■□□□ 1.5
COL1A1P02452 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC24.41■■□□□ 1.5
COL1A1P02452 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC24.41■■□□□ 1.5
COL1A1P02452 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC24.41■■□□□ 1.5
COL1A1P02452 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL1A1P02452 TK2-204ENST00000525974 1178 ntTSL 2 BASIC24.41■■□□□ 1.5
COL1A1P02452 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC24.41■■□□□ 1.5
COL1A1P02452 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC24.41■■□□□ 1.5
COL1A1P02452 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
COL1A1P02452 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL1A1P02452 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL1A1P02452 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL1A1P02452 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC24.41■■□□□ 1.5
COL1A1P02452 AC005229.4-201ENST00000610085 2198 ntBASIC24.41■■□□□ 1.5
COL1A1P02452 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC24.41■■□□□ 1.5
COL1A1P02452 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
COL1A1P02452 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC24.41■■□□□ 1.5
COL1A1P02452 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
COL1A1P02452 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL1A1P02452 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL1A1P02452 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC24.4■■□□□ 1.5
COL1A1P02452 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC24.4■■□□□ 1.5
COL1A1P02452 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL1A1P02452 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL1A1P02452 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
COL1A1P02452 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC24.4■■□□□ 1.5
COL1A1P02452 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
COL1A1P02452 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC24.4■■□□□ 1.5
COL1A1P02452 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC24.4■■□□□ 1.5
COL1A1P02452 RARRES2P10-201ENST00000564312 460 ntBASIC24.4■■□□□ 1.5
COL1A1P02452 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC24.4■■□□□ 1.5
COL1A1P02452 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
COL1A1P02452 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
COL1A1P02452 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL1A1P02452 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms