Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 AC131281.2-201ENST00000520478 145 ntBASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.53■□□□□ 0.4
TRAV1-2A0A0B4J238 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 MIR572-201ENST00000384983 95 ntBASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 AC120498.10-201ENST00000621827 505 ntBASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-2A0A0B4J238 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
TRAV1-2A0A0B4J238 AC093503.3-201ENST00000624917 2352 ntBASIC17.52■□□□□ 0.39
TRAV1-2A0A0B4J238 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV1-2A0A0B4J238 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.52■□□□□ 0.39
TRAV1-2A0A0B4J238 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV1-2A0A0B4J238 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV1-2A0A0B4J238 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV1-2A0A0B4J238 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-2A0A0B4J238 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 UNC93B3-201ENST00000308076 687 ntBASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-2A0A0B4J238 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.49■□□□□ 0.39
TRAV1-2A0A0B4J238 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.49■□□□□ 0.39
TRAV1-2A0A0B4J238 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.49■□□□□ 0.39
TRAV1-2A0A0B4J238 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-2A0A0B4J238 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-2A0A0B4J238 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-2A0A0B4J238 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.39
TRAV1-2A0A0B4J238 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-2A0A0B4J238 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.49■□□□□ 0.39
TRAV1-2A0A0B4J238 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TRAV1-2A0A0B4J238 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms