Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 AIRN-201ENST00000601203 4374 ntBASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 AC138932.1-201ENST00000534164 6830 ntBASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM56Q9BRZ2 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TRIM56Q9BRZ2 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 KRT19P1-201ENST00000405746 1186 ntBASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 NTF6G-201ENST00000591094 616 ntBASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 AC243732.1-201ENST00000612648 864 ntBASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM56Q9BRZ2 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 TCF3P1-201ENST00000423021 1937 ntBASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.53■□□□□ 0.88
TRIM56Q9BRZ2 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM56Q9BRZ2 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM56Q9BRZ2 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM56Q9BRZ2 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM56Q9BRZ2 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM56Q9BRZ2 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM56Q9BRZ2 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.52■□□□□ 0.88
TRIM56Q9BRZ2 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms