Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.232e-6■■■■□ 24.5
UPF1Q92900 SLC4A1-202ENST00000399246 3855 ntTSL 5 BASIC11.6□□□□□ -0.552e-6■■■■□ 24.5
UPF1Q92900 ASCC3-202ENST00000324723 852 ntTSL 325.39■■□□□ 1.665e-6■■■■□ 24.5
UPF1Q92900 ASCC3-205ENST00000468245 1227 ntTSL 224.46■■□□□ 1.515e-6■■■■□ 24.5
UPF1Q92900 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.498e-7■■■■□ 24.5
UPF1Q92900 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.395e-6■■■■□ 24.5
UPF1Q92900 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.56■□□□□ 0.085e-6■■■■□ 24.5
UPF1Q92900 FTO-203ENST00000460382 1517 ntTSL 5 BASIC12.88□□□□□ -0.353e-7■■■■□ 24.5
UPF1Q92900 ASCC3-201ENST00000324696 3618 ntTSL 212.82□□□□□ -0.365e-6■■■■□ 24.5
UPF1Q92900 FTO-211ENST00000635892 1085 ntTSL 512.41□□□□□ -0.423e-7■■■■□ 24.5
UPF1Q92900 ASCC3-203ENST00000369143 3433 ntTSL 1 (best) BASIC12.21□□□□□ -0.465e-6■■■■□ 24.5
UPF1Q92900 ASCC3-204ENST00000369162 8146 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.695e-6■■■■□ 24.5
UPF1Q92900 ATPAF1-206ENST00000492233 429 ntTSL 34.54□□□□□ -1.685e-6■■■■□ 24.5
UPF1Q92900 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.088e-8■■■■□ 24.4
UPF1Q92900 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC12.6□□□□□ -0.393e-6■■■■□ 24.4
UPF1Q92900 MAOA-201ENST00000338702 4015 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.633e-6■■■■□ 24.4
UPF1Q92900 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.012e-27■■■■□ 24.4
UPF1Q92900 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC12.11□□□□□ -0.472e-27■■■■□ 24.4
UPF1Q92900 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.56■■□□□ 1.366e-8■■■■□ 24.4
UPF1Q92900 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC32.14■■■□□ 2.744e-7■■■■□ 24.4
UPF1Q92900 WDR13-212ENST00000498631 859 ntTSL 230.46■■■□□ 2.477e-6■■■■□ 24.4
UPF1Q92900 WDR13-208ENST00000486125 936 ntTSL 230.46■■■□□ 2.477e-6■■■■□ 24.4
UPF1Q92900 WDR13-205ENST00000472440 430 ntTSL 229.05■■■□□ 2.247e-6■■■■□ 24.4
UPF1Q92900 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.227e-6■■■■□ 24.4
UPF1Q92900 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.147e-6■■■■□ 24.4
UPF1Q92900 FAM207A-203ENST00000458015 643 ntTSL 528.08■■■□□ 2.097e-6■■■■□ 24.4
UPF1Q92900 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC27.9■■■□□ 2.067e-6■■■■□ 24.4
UPF1Q92900 FAM207A-204ENST00000479127 759 ntTSL 325.41■■□□□ 1.667e-6■■■■□ 24.4
UPF1Q92900 PDHB-203ENST00000461692 1535 ntTSL 1 (best)24.77■■□□□ 1.567e-6■■■■□ 24.4
UPF1Q92900 WDR13-204ENST00000470124 437 ntTSL 324.2■■□□□ 1.467e-6■■■■□ 24.4
UPF1Q92900 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.287e-6■■■■□ 24.4
UPF1Q92900 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC23.03■■□□□ 1.287e-6■■■■□ 24.4
UPF1Q92900 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC22.44■■□□□ 1.187e-6■■■■□ 24.4
UPF1Q92900 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.166e-8■■■■□ 24.4
UPF1Q92900 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC22.27■■□□□ 1.167e-6■■■■□ 24.4
UPF1Q92900 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC22.25■■□□□ 1.157e-6■■■■□ 24.4
UPF1Q92900 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC22.05■■□□□ 1.127e-6■■■■□ 24.4
UPF1Q92900 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.087e-6■■■■□ 24.4
UPF1Q92900 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC21.63■■□□□ 1.057e-6■■■■□ 24.4
UPF1Q92900 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.057e-6■■■■□ 24.4
UPF1Q92900 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.052e-7■■■■□ 24.4
UPF1Q92900 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC21.57■■□□□ 1.047e-6■■■■□ 24.4
UPF1Q92900 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC21.01■□□□□ 0.957e-6■■■■□ 24.4
UPF1Q92900 AL139353.1-203ENST00000547760 749 ntTSL 320.96■□□□□ 0.956e-8■■■■□ 24.4
UPF1Q92900 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC20.89■□□□□ 0.947e-6■■■■□ 24.4
UPF1Q92900 DNAJC11-209ENST00000472414 725 ntTSL 320.84■□□□□ 0.937e-6■■■■□ 24.4
UPF1Q92900 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC20.72■□□□□ 0.917e-6■■■■□ 24.4
UPF1Q92900 TRIM11-206ENST00000602582 682 ntTSL 320.26■□□□□ 0.837e-6■■■■□ 24.4
UPF1Q92900 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.727e-6■■■■□ 24.4
UPF1Q92900 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.717e-6■■■■□ 24.4
UPF1Q92900 WDR13-206ENST00000479279 2486 ntTSL 1 (best)19.3■□□□□ 0.687e-6■■■■□ 24.4
UPF1Q92900 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.627e-6■■■■□ 24.4
UPF1Q92900 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC18.32■□□□□ 0.527e-6■■■■□ 24.4
UPF1Q92900 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC18.25■□□□□ 0.517e-6■■■■□ 24.4
UPF1Q92900 AC115618.3-201ENST00000623114 425 ntBASIC18.05■□□□□ 0.487e-6■■■■□ 24.4
UPF1Q92900 PDHB-202ENST00000383714 1478 ntTSL 1 (best)17.76■□□□□ 0.437e-6■■■■□ 24.4
UPF1Q92900 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.437e-6■■■■□ 24.4
UPF1Q92900 PDHB-204ENST00000469364 1616 ntTSL 517.61■□□□□ 0.417e-6■■■■□ 24.4
UPF1Q92900 AL139353.1-202ENST00000547378 474 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.256e-8■■■■□ 24.4
UPF1Q92900 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.237e-6■■■■□ 24.4
UPF1Q92900 SNHG17-207ENST00000449469 2138 ntTSL 216.45■□□□□ 0.227e-6■■■■□ 24.4
UPF1Q92900 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.41■□□□□ 0.227e-6■■■■□ 24.4
UPF1Q92900 WDR13-209ENST00000492715 2612 ntTSL 516.2■□□□□ 0.187e-6■■■■□ 24.4
UPF1Q92900 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.187e-6■■■■□ 24.4
UPF1Q92900 GPATCH2L-210ENST00000556675 771 ntTSL 315.94■□□□□ 0.147e-6■■■■□ 24.4
UPF1Q92900 LDAH-204ENST00000403006 1895 ntTSL 5 BASIC15.9■□□□□ 0.147e-6■■■■□ 24.4
UPF1Q92900 SNHG17-202ENST00000414142 2102 ntTSL 215.47■□□□□ 0.077e-6■■■■□ 24.4
UPF1Q92900 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -07e-6■■■■□ 24.4
UPF1Q92900 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.063e-7■■■■□ 24.4
UPF1Q92900 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.167e-6■■■■□ 24.4
UPF1Q92900 LDAH-202ENST00000381090 2045 ntTSL 5 BASIC14.01□□□□□ -0.177e-6■■■■□ 24.4
UPF1Q92900 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.176e-8■■■■□ 24.4
UPF1Q92900 TCEANC2-204ENST00000498272 2538 ntTSL 213.95□□□□□ -0.187e-6■■■■□ 24.4
UPF1Q92900 PDHB-207ENST00000479945 4459 ntTSL 213.88□□□□□ -0.197e-6■■■■□ 24.4
UPF1Q92900 SNHG17-204ENST00000423536 517 ntTSL 2 BASIC13.19□□□□□ -0.37e-6■■■■□ 24.4
UPF1Q92900 FANCC-202ENST00000375305 4504 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.347e-6■■■■□ 24.4
UPF1Q92900 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.43e-7■■■■□ 24.4
UPF1Q92900 TTC4-203ENST00000486091 1873 ntTSL 212.23□□□□□ -0.457e-6■■■■□ 24.4
UPF1Q92900 SCAMP2-204ENST00000563829 3162 ntTSL 211.66□□□□□ -0.541e-10■■■■□ 24.4
UPF1Q92900 TMEM106C-219ENST00000552546 742 ntTSL 4 BASIC11.05□□□□□ -0.647e-6■■■■□ 24.4
UPF1Q92900 GPATCH2L-208ENST00000556372 539 ntTSL 310.78□□□□□ -0.687e-6■■■■□ 24.4
UPF1Q92900 SNX29-205ENST00000566228 8171 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.697e-6■■■■□ 24.4
UPF1Q92900 LDAH-201ENST00000237822 2907 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.737e-6■■■■□ 24.4
UPF1Q92900 VPS53-220ENST00000576149 2444 ntTSL 510.45□□□□□ -0.747e-6■■■■□ 24.4
UPF1Q92900 UBXN10-201ENST00000375099 5571 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.847e-6■■■■□ 24.4
UPF1Q92900 AL139353.1-201ENST00000549185 3860 ntTSL 29.09□□□□□ -0.956e-8■■■■□ 24.4
UPF1Q92900 LDAH-210ENST00000470099 2116 ntTSL 28.99□□□□□ -0.977e-6■■■■□ 24.4
UPF1Q92900 LDAH-208ENST00000435420 3837 ntTSL 2 BASIC8.84□□□□□ -0.997e-6■■■■□ 24.4
UPF1Q92900 LDAH-209ENST00000440866 3728 ntTSL 2 BASIC8.8□□□□□ -17e-6■■■■□ 24.4
UPF1Q92900 TMEM106C-211ENST00000549287 587 ntTSL 28.55□□□□□ -1.047e-6■■■■□ 24.4
UPF1Q92900 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC8.44□□□□□ -1.067e-6■■■■□ 24.4
UPF1Q92900 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC8.28□□□□□ -1.087e-6■■■■□ 24.4
UPF1Q92900 TMEM106C-206ENST00000547682 491 ntTSL 38.05□□□□□ -1.127e-6■■■■□ 24.4
UPF1Q92900 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC7.93□□□□□ -1.147e-6■■■■□ 24.4
UPF1Q92900 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC7.63□□□□□ -1.197e-6■■■■□ 24.4
UPF1Q92900 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.227e-6■■■■□ 24.4
UPF1Q92900 TMEM106C-221ENST00000553217 660 ntTSL 37.39□□□□□ -1.237e-6■■■■□ 24.4
UPF1Q92900 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.277e-6■■■■□ 24.4
UPF1Q92900 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC7.05□□□□□ -1.287e-6■■■■□ 24.4
UPF1Q92900 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.8□□□□□ -1.327e-6■■■■□ 24.4
Retrieved 100 of 15,879 protein–RNA pairs in 157.4 ms