Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 AC006538.3-201ENST00000612495 578 ntBASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 AL121906.2-201ENST00000621597 723 ntBASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
SMC1BQ8NDV3 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
SMC1BQ8NDV3 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC24.14■■□□□ 1.46
SMC1BQ8NDV3 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.46
SMC1BQ8NDV3 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC24.14■■□□□ 1.46
SMC1BQ8NDV3 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
SMC1BQ8NDV3 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 TSPY5P-201ENST00000426936 936 ntBASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
SMC1BQ8NDV3 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 PNN-205ENST00000556530 601 ntTSL 2 BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 AL356652.1-201ENST00000615962 565 ntBASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
SMC1BQ8NDV3 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC24.12■■□□□ 1.45
SMC1BQ8NDV3 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SMC1BQ8NDV3 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SMC1BQ8NDV3 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
SMC1BQ8NDV3 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC24.12■■□□□ 1.45
SMC1BQ8NDV3 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC24.12■■□□□ 1.45
SMC1BQ8NDV3 AP000593.1-201ENST00000393668 712 ntBASIC24.12■■□□□ 1.45
SMC1BQ8NDV3 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
SMC1BQ8NDV3 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC24.12■■□□□ 1.45
SMC1BQ8NDV3 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC24.12■■□□□ 1.45
SMC1BQ8NDV3 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SMC1BQ8NDV3 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
SMC1BQ8NDV3 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SMC1BQ8NDV3 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SMC1BQ8NDV3 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
SMC1BQ8NDV3 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC24.11■■□□□ 1.45
SMC1BQ8NDV3 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC24.11■■□□□ 1.45
SMC1BQ8NDV3 YBX1P2-201ENST00000489612 999 ntBASIC24.11■■□□□ 1.45
SMC1BQ8NDV3 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SMC1BQ8NDV3 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC24.11■■□□□ 1.45
SMC1BQ8NDV3 AC124283.5-201ENST00000624661 1809 ntBASIC24.11■■□□□ 1.45
SMC1BQ8NDV3 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 AC246785.2-201ENST00000432512 513 ntBASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 IRF5-214ENST00000613821 595 ntTSL 5 BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 FSCN1P1-201ENST00000568912 1481 ntBASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SMC1BQ8NDV3 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 AC139530.1-201ENST00000575312 1977 ntBASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 HMGA1P5-201ENST00000412453 271 ntBASIC24.09■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms