Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SH3RF1Q7Z6J0 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SH3RF1Q7Z6J0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SH3RF1Q7Z6J0 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 BID-203ENST00000399765 1879 ntTSL 2 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 AC027702.1-201ENST00000563810 1770 ntBASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 CBFB-203ENST00000561924 584 ntTSL 5 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 RN7SL471P-201ENST00000580476 299 ntBASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 HLA-B-256ENST00000639848 1089 ntBASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC23.2■■□□□ 1.3
SH3RF1Q7Z6J0 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 KRT18P21-201ENST00000515767 1272 ntBASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SH3RF1Q7Z6J0 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 SLC25A24-204ENST00000569674 2357 ntBASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SH3RF1Q7Z6J0 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC23.17■■□□□ 1.3
SH3RF1Q7Z6J0 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 RPS20-210ENST00000523936 899 ntTSL 2 BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms