Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 AL122018.1-201ENST00000446607 2310 ntBASIC11.82□□□□□ -0.52
RPS28P62857 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC11.82□□□□□ -0.52
RPS28P62857 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC11.82□□□□□ -0.52
RPS28P62857 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
RPS28P62857 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
RPS28P62857 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC11.82□□□□□ -0.52
RPS28P62857 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
RPS28P62857 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
RPS28P62857 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC11.82□□□□□ -0.52
RPS28P62857 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
RPS28P62857 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
RPS28P62857 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
RPS28P62857 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC11.82□□□□□ -0.52
RPS28P62857 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC11.81□□□□□ -0.52
RPS28P62857 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC11.81□□□□□ -0.52
RPS28P62857 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC11.81□□□□□ -0.52
RPS28P62857 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
RPS28P62857 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC11.81□□□□□ -0.52
RPS28P62857 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC11.81□□□□□ -0.52
RPS28P62857 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC11.81□□□□□ -0.52
RPS28P62857 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC11.81□□□□□ -0.52
RPS28P62857 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC11.81□□□□□ -0.52
RPS28P62857 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
RPS28P62857 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC11.81□□□□□ -0.52
RPS28P62857 OR6D1P-202ENST00000641007 5290 ntBASIC11.81□□□□□ -0.52
RPS28P62857 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
RPS28P62857 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
RPS28P62857 AL354751.1-201ENST00000412768 1863 ntBASIC11.8□□□□□ -0.52
RPS28P62857 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
RPS28P62857 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC11.8□□□□□ -0.52
RPS28P62857 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC11.8□□□□□ -0.52
RPS28P62857 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC11.8□□□□□ -0.52
RPS28P62857 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
RPS28P62857 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC11.8□□□□□ -0.52
RPS28P62857 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
RPS28P62857 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 MEST-211ENST00000437945 1455 ntTSL 5 BASIC11.8□□□□□ -0.52
RPS28P62857 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
RPS28P62857 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC11.8□□□□□ -0.52
RPS28P62857 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC11.8□□□□□ -0.52
RPS28P62857 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
RPS28P62857 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC11.8□□□□□ -0.52
RPS28P62857 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
RPS28P62857 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC11.8□□□□□ -0.52
RPS28P62857 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
RPS28P62857 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
RPS28P62857 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
RPS28P62857 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPS28P62857 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPS28P62857 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPS28P62857 ERF-202ENST00000440177 2032 ntTSL 2 BASIC11.79□□□□□ -0.52
RPS28P62857 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPS28P62857 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
RPS28P62857 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPS28P62857 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPS28P62857 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
RPS28P62857 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
RPS28P62857 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPS28P62857 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPS28P62857 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
RPS28P62857 FER1L4-210ENST00000615531 5998 ntBASIC11.79□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms