Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 BX664615.1-201ENST00000443558 458 ntBASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 FAM86EP-206ENST00000510506 987 ntBASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 PP7080-204ENST00000510714 601 ntTSL 3 BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 CR392000.1-201ENST00000624770 1228 ntBASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL17A1Q9UMD9 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 AP000347.1-202ENST00000435868 847 ntBASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 LINC01238-205ENST00000567549 1107 ntBASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 NARF-205ENST00000412079 1760 ntTSL 5 BASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL17A1Q9UMD9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC30.95■■■□□ 2.55
COL17A1Q9UMD9 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
COL17A1Q9UMD9 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC30.95■■■□□ 2.55
COL17A1Q9UMD9 KSR1P1-201ENST00000446298 240 ntBASIC30.95■■■□□ 2.55
COL17A1Q9UMD9 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
COL17A1Q9UMD9 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC30.95■■■□□ 2.55
COL17A1Q9UMD9 DBP-204ENST00000599385 709 ntTSL 3 BASIC30.95■■■□□ 2.55
COL17A1Q9UMD9 AL356652.1-201ENST00000615962 565 ntBASIC30.95■■■□□ 2.55
COL17A1Q9UMD9 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC30.95■■■□□ 2.55
COL17A1Q9UMD9 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC30.95■■■□□ 2.55
COL17A1Q9UMD9 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.55
COL17A1Q9UMD9 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
COL17A1Q9UMD9 MED25-212ENST00000618715 1467 ntTSL 5 BASIC30.95■■■□□ 2.54
COL17A1Q9UMD9 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC30.95■■■□□ 2.54
COL17A1Q9UMD9 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
COL17A1Q9UMD9 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.54
COL17A1Q9UMD9 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.54
COL17A1Q9UMD9 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC30.95■■■□□ 2.54
COL17A1Q9UMD9 EGLN1P1-201ENST00000531623 762 ntBASIC30.95■■■□□ 2.54
COL17A1Q9UMD9 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC30.95■■■□□ 2.54
COL17A1Q9UMD9 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL17A1Q9UMD9 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC30.94■■■□□ 2.54
COL17A1Q9UMD9 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL17A1Q9UMD9 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC30.94■■■□□ 2.54
COL17A1Q9UMD9 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL17A1Q9UMD9 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL17A1Q9UMD9 PKM-204ENST00000449901 2526 ntTSL 2 BASIC30.94■■■□□ 2.54
COL17A1Q9UMD9 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL17A1Q9UMD9 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
COL17A1Q9UMD9 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL17A1Q9UMD9 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC30.94■■■□□ 2.54
COL17A1Q9UMD9 KRT16P1-201ENST00000399124 1418 ntBASIC30.94■■■□□ 2.54
COL17A1Q9UMD9 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 PCED1CP-201ENST00000419887 785 ntBASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 AC246785.2-201ENST00000432512 513 ntBASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL17A1Q9UMD9 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 AP005242.2-201ENST00000580065 1175 ntBASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL17A1Q9UMD9 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC30.91■■■□□ 2.54
COL17A1Q9UMD9 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms