Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COMMD3Q9UBI1 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 PRTG-204ENST00000561292 833 ntTSL 3 BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 BRD4-212ENST00000630599 726 ntTSL 2 BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.8■□□□□ 0.44
COMMD3Q9UBI1 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 TSPY9P-201ENST00000440215 945 ntBASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 TSPY11P-201ENST00000442607 1045 ntBASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 MIR4787-201ENST00000607364 84 ntBASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 AC093484.2-201ENST00000580996 2166 ntBASIC17.79■□□□□ 0.44
COMMD3Q9UBI1 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 AC093503.3-201ENST00000624917 2352 ntBASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COMMD3Q9UBI1 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COMMD3Q9UBI1 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.77■□□□□ 0.43
COMMD3Q9UBI1 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COMMD3Q9UBI1 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms