Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 KRT17P3-201ENST00000420566 1262 ntBASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 POM121L13P-201ENST00000422362 380 ntBASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 AC069544.1-201ENST00000609399 999 ntBASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 AC026310.3-201ENST00000625186 2373 ntBASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 PLK5-205ENST00000642079 1969 ntBASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCF1Q9UBD9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 AC142381.4-202ENST00000563973 229 ntBASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.03■□□□□ 0.48
CLCF1Q9UBD9 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 AC233263.1-201ENST00000578059 224 ntBASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.02■□□□□ 0.48
CLCF1Q9UBD9 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLCF1Q9UBD9 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.02■□□□□ 0.47
CLCF1Q9UBD9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.02■□□□□ 0.47
CLCF1Q9UBD9 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CLCF1Q9UBD9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLCF1Q9UBD9 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.47
CLCF1Q9UBD9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLCF1Q9UBD9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms