Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 OR10C1-204ENST00000622521 1039 ntBASIC17.8■□□□□ 0.44
VRK1Q99986 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
VRK1Q99986 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.8■□□□□ 0.44
VRK1Q99986 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.8■□□□□ 0.44
VRK1Q99986 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK1Q99986 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK1Q99986 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK1Q99986 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
VRK1Q99986 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC17.79■□□□□ 0.44
VRK1Q99986 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.79■□□□□ 0.44
VRK1Q99986 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.79■□□□□ 0.44
VRK1Q99986 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VRK1Q99986 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.79■□□□□ 0.44
VRK1Q99986 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.79■□□□□ 0.44
VRK1Q99986 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.79■□□□□ 0.44
VRK1Q99986 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.79■□□□□ 0.44
VRK1Q99986 ME2-206ENST00000638410 2289 ntTSL 5 BASIC17.79■□□□□ 0.44
VRK1Q99986 ME2-210ENST00000639255 2262 ntTSL 5 BASIC17.79■□□□□ 0.44
VRK1Q99986 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK1Q99986 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VRK1Q99986 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VRK1Q99986 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VRK1Q99986 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.78■□□□□ 0.44
VRK1Q99986 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VRK1Q99986 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VRK1Q99986 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VRK1Q99986 CD99P1-205ENST00000527459 561 ntBASIC17.78■□□□□ 0.44
VRK1Q99986 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.78■□□□□ 0.44
VRK1Q99986 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
VRK1Q99986 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
VRK1Q99986 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.78■□□□□ 0.44
VRK1Q99986 AC133041.1-202ENST00000642053 222 ntBASIC17.78■□□□□ 0.44
VRK1Q99986 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
VRK1Q99986 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VRK1Q99986 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.78■□□□□ 0.44
VRK1Q99986 FEM1AP1-201ENST00000431297 1995 ntBASIC17.78■□□□□ 0.44
VRK1Q99986 AC138932.1-201ENST00000534164 6830 ntBASIC17.78■□□□□ 0.44
VRK1Q99986 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VRK1Q99986 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
VRK1Q99986 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VRK1Q99986 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
VRK1Q99986 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VRK1Q99986 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
VRK1Q99986 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.77■□□□□ 0.44
VRK1Q99986 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.77■□□□□ 0.44
VRK1Q99986 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.77■□□□□ 0.44
VRK1Q99986 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VRK1Q99986 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VRK1Q99986 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VRK1Q99986 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VRK1Q99986 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VRK1Q99986 AC245052.3-201ENST00000450182 901 ntBASIC17.77■□□□□ 0.44
VRK1Q99986 MIR4758-201ENST00000577688 71 ntBASIC17.77■□□□□ 0.44
VRK1Q99986 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
VRK1Q99986 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.77■□□□□ 0.44
VRK1Q99986 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
VRK1Q99986 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VRK1Q99986 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
VRK1Q99986 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
VRK1Q99986 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK1Q99986 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
VRK1Q99986 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK1Q99986 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
VRK1Q99986 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
VRK1Q99986 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK1Q99986 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
VRK1Q99986 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK1Q99986 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK1Q99986 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.76■□□□□ 0.43
VRK1Q99986 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK1Q99986 AC069152.1-201ENST00000438030 544 ntBASIC17.76■□□□□ 0.43
VRK1Q99986 AC093787.1-201ENST00000450396 207 ntBASIC17.76■□□□□ 0.43
VRK1Q99986 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.76■□□□□ 0.43
VRK1Q99986 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK1Q99986 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK1Q99986 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK1Q99986 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.76■□□□□ 0.43
VRK1Q99986 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.76■□□□□ 0.43
VRK1Q99986 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VRK1Q99986 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VRK1Q99986 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
VRK1Q99986 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC17.75■□□□□ 0.43
VRK1Q99986 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK1Q99986 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms