Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 UBE2DNL-204ENST00000602536 740 ntBASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 SLC7A5P1-201ENST00000568957 537 ntBASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.98■□□□□ 0.95
ATG4AQ8WYN0 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4AQ8WYN0 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 AL158211.5-201ENST00000623583 2518 ntBASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ATG4AQ8WYN0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ATG4AQ8WYN0 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms