Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 AC121338.2-201ENST00000622535 1744 ntBASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDDC3Q8N4P3 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 AL390719.1-204ENST00000412397 1219 ntBASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.37■□□□□ 0.85
HDDC3Q8N4P3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDDC3Q8N4P3 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 KRT17P2-201ENST00000300992 1314 ntBASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 KRT18P21-201ENST00000515767 1272 ntBASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 AC120498.8-201ENST00000614275 531 ntBASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 MIR2861-201ENST00000636310 90 ntBASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDDC3Q8N4P3 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms