Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.79■□□□□ 0.44
SOX2P48431 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SOX2P48431 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.79■□□□□ 0.44
SOX2P48431 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.79■□□□□ 0.44
SOX2P48431 NT5C3AP1-201ENST00000394500 1012 ntBASIC17.79■□□□□ 0.44
SOX2P48431 AC245052.3-201ENST00000450182 901 ntBASIC17.79■□□□□ 0.44
SOX2P48431 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.79■□□□□ 0.44
SOX2P48431 TPRG1LP1-201ENST00000598702 760 ntBASIC17.79■□□□□ 0.44
SOX2P48431 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.79■□□□□ 0.44
SOX2P48431 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SOX2P48431 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.79■□□□□ 0.44
SOX2P48431 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX2P48431 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX2P48431 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX2P48431 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.78■□□□□ 0.44
SOX2P48431 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SOX2P48431 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX2P48431 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SOX2P48431 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.78■□□□□ 0.44
SOX2P48431 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.78■□□□□ 0.44
SOX2P48431 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SOX2P48431 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX2P48431 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.78■□□□□ 0.44
SOX2P48431 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SOX2P48431 MIR939-201ENST00000401314 82 ntBASIC17.78■□□□□ 0.44
SOX2P48431 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.78■□□□□ 0.44
SOX2P48431 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC17.78■□□□□ 0.44
SOX2P48431 AC079140.4-201ENST00000507448 529 ntBASIC17.78■□□□□ 0.44
SOX2P48431 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC17.78■□□□□ 0.44
SOX2P48431 AL355001.2-201ENST00000620617 1191 ntBASIC17.78■□□□□ 0.44
SOX2P48431 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.78■□□□□ 0.44
SOX2P48431 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX2P48431 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SOX2P48431 AC120498.9-201ENST00000339021 3867 ntBASIC17.78■□□□□ 0.44
SOX2P48431 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX2P48431 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX2P48431 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX2P48431 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX2P48431 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX2P48431 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX2P48431 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
SOX2P48431 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX2P48431 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
SOX2P48431 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SOX2P48431 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
SOX2P48431 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX2P48431 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
SOX2P48431 AC116562.4-201ENST00000641316 2276 ntBASIC17.77■□□□□ 0.44
SOX2P48431 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.77■□□□□ 0.44
SOX2P48431 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX2P48431 AC091305.1-201ENST00000479476 895 ntBASIC17.77■□□□□ 0.44
SOX2P48431 CPT2-209ENST00000636935 803 ntTSL 5 BASIC17.77■□□□□ 0.44
SOX2P48431 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SOX2P48431 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX2P48431 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX2P48431 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
SOX2P48431 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
SOX2P48431 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
SOX2P48431 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SOX2P48431 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SOX2P48431 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SOX2P48431 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SOX2P48431 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX2P48431 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SOX2P48431 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SOX2P48431 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX2P48431 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SOX2P48431 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX2P48431 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SOX2P48431 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SOX2P48431 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC17.76■□□□□ 0.43
SOX2P48431 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SOX2P48431 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC17.76■□□□□ 0.43
SOX2P48431 PEMT-206ENST00000435340 960 ntTSL 5 BASIC17.76■□□□□ 0.43
SOX2P48431 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.76■□□□□ 0.43
SOX2P48431 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC17.76■□□□□ 0.43
SOX2P48431 MIR2861-201ENST00000636310 90 ntBASIC17.76■□□□□ 0.43
SOX2P48431 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX2P48431 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SOX2P48431 AL158211.5-201ENST00000623583 2518 ntBASIC17.76■□□□□ 0.43
SOX2P48431 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX2P48431 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
SOX2P48431 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms