Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SOX3P41225 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SOX3P41225 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
SOX3P41225 BX276092.2-201ENST00000417668 665 ntBASIC19.02■□□□□ 0.64
SOX3P41225 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.02■□□□□ 0.64
SOX3P41225 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.02■□□□□ 0.64
SOX3P41225 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SOX3P41225 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SOX3P41225 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SOX3P41225 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
SOX3P41225 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
SOX3P41225 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SOX3P41225 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SOX3P41225 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
SOX3P41225 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX3P41225 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SOX3P41225 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SOX3P41225 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SOX3P41225 AC116050.2-201ENST00000612102 1779 ntBASIC19.01■□□□□ 0.63
SOX3P41225 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.01■□□□□ 0.63
SOX3P41225 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX3P41225 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.01■□□□□ 0.63
SOX3P41225 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.01■□□□□ 0.63
SOX3P41225 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.01■□□□□ 0.63
SOX3P41225 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.01■□□□□ 0.63
SOX3P41225 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.01■□□□□ 0.63
SOX3P41225 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX3P41225 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SOX3P41225 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
SOX3P41225 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SOX3P41225 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19■□□□□ 0.63
SOX3P41225 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19■□□□□ 0.63
SOX3P41225 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SOX3P41225 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19■□□□□ 0.63
SOX3P41225 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SOX3P41225 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SOX3P41225 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SOX3P41225 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19■□□□□ 0.63
SOX3P41225 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SOX3P41225 AC069152.1-201ENST00000438030 544 ntBASIC19■□□□□ 0.63
SOX3P41225 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19■□□□□ 0.63
SOX3P41225 MIR4758-201ENST00000577688 71 ntBASIC19■□□□□ 0.63
SOX3P41225 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19■□□□□ 0.63
SOX3P41225 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
SOX3P41225 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SOX3P41225 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SOX3P41225 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SOX3P41225 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SOX3P41225 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19■□□□□ 0.63
SOX3P41225 AL391422.3-201ENST00000603791 2761 ntBASIC19■□□□□ 0.63
SOX3P41225 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19■□□□□ 0.63
SOX3P41225 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
SOX3P41225 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SOX3P41225 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX3P41225 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SOX3P41225 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.99■□□□□ 0.63
SOX3P41225 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SOX3P41225 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.99■□□□□ 0.63
SOX3P41225 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX3P41225 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX3P41225 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.99■□□□□ 0.63
SOX3P41225 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.99■□□□□ 0.63
SOX3P41225 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.99■□□□□ 0.63
SOX3P41225 AC133041.1-202ENST00000642053 222 ntBASIC18.99■□□□□ 0.63
SOX3P41225 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.99■□□□□ 0.63
SOX3P41225 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX3P41225 PCDHAC2-203ENST00000615316 3011 ntBASIC18.99■□□□□ 0.63
SOX3P41225 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
SOX3P41225 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
SOX3P41225 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SOX3P41225 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.99■□□□□ 0.63
SOX3P41225 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX3P41225 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX3P41225 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.98■□□□□ 0.63
SOX3P41225 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.98■□□□□ 0.63
SOX3P41225 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SOX3P41225 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SOX3P41225 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SOX3P41225 AL355472.2-201ENST00000422958 438 ntBASIC18.98■□□□□ 0.63
SOX3P41225 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.98■□□□□ 0.63
SOX3P41225 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.98■□□□□ 0.63
SOX3P41225 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SOX3P41225 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.98■□□□□ 0.63
SOX3P41225 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.98■□□□□ 0.63
SOX3P41225 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.98■□□□□ 0.63
SOX3P41225 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.98■□□□□ 0.63
SOX3P41225 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX3P41225 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX3P41225 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX3P41225 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX3P41225 AL049796.1-201ENST00000565336 1766 ntBASIC18.98■□□□□ 0.63
SOX3P41225 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX3P41225 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SOX3P41225 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX3P41225 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SOX3P41225 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SOX3P41225 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SOX3P41225 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SOX3P41225 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.97■□□□□ 0.63
SOX3P41225 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms