Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH3P20585 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
MSH3P20585 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH3P20585 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH3P20585 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH3P20585 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH3P20585 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH3P20585 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.16■□□□□ 0.82
MSH3P20585 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH3P20585 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH3P20585 FEM1AP1-201ENST00000431297 1995 ntBASIC20.16■□□□□ 0.82
MSH3P20585 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH3P20585 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
MSH3P20585 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH3P20585 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH3P20585 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH3P20585 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH3P20585 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
MSH3P20585 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH3P20585 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH3P20585 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MSH3P20585 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MSH3P20585 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.15■□□□□ 0.82
MSH3P20585 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MSH3P20585 AL157384.1-201ENST00000445995 2473 ntBASIC20.15■□□□□ 0.82
MSH3P20585 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH3P20585 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH3P20585 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MSH3P20585 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
MSH3P20585 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
MSH3P20585 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.15■□□□□ 0.82
MSH3P20585 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MSH3P20585 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.15■□□□□ 0.82
MSH3P20585 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH3P20585 KRT17P1-201ENST00000399211 1546 ntBASIC20.15■□□□□ 0.82
MSH3P20585 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
MSH3P20585 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
MSH3P20585 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH3P20585 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH3P20585 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MSH3P20585 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.14■□□□□ 0.82
MSH3P20585 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MSH3P20585 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
MSH3P20585 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
MSH3P20585 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.14■□□□□ 0.81
MSH3P20585 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.14■□□□□ 0.81
MSH3P20585 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.14■□□□□ 0.81
MSH3P20585 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.14■□□□□ 0.81
MSH3P20585 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.14■□□□□ 0.81
MSH3P20585 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MSH3P20585 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH3P20585 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.14■□□□□ 0.81
MSH3P20585 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
MSH3P20585 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.14■□□□□ 0.81
MSH3P20585 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.14■□□□□ 0.81
MSH3P20585 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
MSH3P20585 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.14■□□□□ 0.81
MSH3P20585 AC105020.6-201ENST00000621523 1217 ntBASIC20.14■□□□□ 0.81
MSH3P20585 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH3P20585 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH3P20585 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH3P20585 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.14■□□□□ 0.81
MSH3P20585 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
MSH3P20585 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH3P20585 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.13■□□□□ 0.81
MSH3P20585 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 KRT8P36-201ENST00000489121 1440 ntBASIC20.13■□□□□ 0.81
MSH3P20585 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.13■□□□□ 0.81
MSH3P20585 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.13■□□□□ 0.81
MSH3P20585 MIR4758-201ENST00000577688 71 ntBASIC20.13■□□□□ 0.81
MSH3P20585 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
MSH3P20585 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.13■□□□□ 0.81
MSH3P20585 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.13■□□□□ 0.81
MSH3P20585 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.13■□□□□ 0.81
MSH3P20585 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.13■□□□□ 0.81
MSH3P20585 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
MSH3P20585 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
MSH3P20585 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH3P20585 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH3P20585 AL121603.2-201ENST00000557373 2117 ntBASIC20.12■□□□□ 0.81
MSH3P20585 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.12■□□□□ 0.81
MSH3P20585 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH3P20585 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH3P20585 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms