Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC009947.2-201ENST00000444014 672 ntBASIC28.86■■■□□ 2.21
NPHP4O75161 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
NPHP4O75161 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
NPHP4O75161 ECEL1P2-202ENST00000465689 757 ntBASIC28.86■■■□□ 2.21
NPHP4O75161 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC28.86■■■□□ 2.21
NPHP4O75161 LINC01238-205ENST00000567549 1107 ntBASIC28.86■■■□□ 2.21
NPHP4O75161 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC28.86■■■□□ 2.21
NPHP4O75161 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
NPHP4O75161 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
NPHP4O75161 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC28.85■■■□□ 2.21
NPHP4O75161 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC28.85■■■□□ 2.21
NPHP4O75161 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
NPHP4O75161 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC28.85■■■□□ 2.21
NPHP4O75161 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
NPHP4O75161 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC28.85■■■□□ 2.21
NPHP4O75161 COPE-203ENST00000351079 907 ntTSL 2 BASIC28.85■■■□□ 2.21
NPHP4O75161 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
NPHP4O75161 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
NPHP4O75161 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC28.85■■■□□ 2.21
NPHP4O75161 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC28.85■■■□□ 2.21
NPHP4O75161 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC28.85■■■□□ 2.21
NPHP4O75161 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC28.85■■■□□ 2.21
NPHP4O75161 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC28.85■■■□□ 2.21
NPHP4O75161 PKM-204ENST00000449901 2526 ntTSL 2 BASIC28.84■■■□□ 2.21
NPHP4O75161 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC28.84■■■□□ 2.21
NPHP4O75161 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC28.84■■■□□ 2.21
NPHP4O75161 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC28.84■■■□□ 2.21
NPHP4O75161 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC28.84■■■□□ 2.21
NPHP4O75161 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
NPHP4O75161 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC28.84■■■□□ 2.21
NPHP4O75161 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC28.84■■■□□ 2.21
NPHP4O75161 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP4O75161 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP4O75161 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP4O75161 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC28.83■■■□□ 2.21
NPHP4O75161 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC28.83■■■□□ 2.21
NPHP4O75161 TSPY14P-201ENST00000303979 915 ntBASIC28.83■■■□□ 2.21
NPHP4O75161 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC28.83■■■□□ 2.21
NPHP4O75161 PRR31-201ENST00000371629 978 ntTSL 2 BASIC28.83■■■□□ 2.21
NPHP4O75161 MESTP1-201ENST00000404287 994 ntBASIC28.83■■■□□ 2.21
NPHP4O75161 AL031133.1-201ENST00000406807 723 ntBASIC28.83■■■□□ 2.21
NPHP4O75161 AP005242.2-201ENST00000580065 1175 ntBASIC28.83■■■□□ 2.21
NPHP4O75161 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC28.83■■■□□ 2.21
NPHP4O75161 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP4O75161 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP4O75161 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC28.83■■■□□ 2.21
NPHP4O75161 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP4O75161 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC28.82■■■□□ 2.2
NPHP4O75161 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP4O75161 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP4O75161 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP4O75161 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC28.82■■■□□ 2.2
NPHP4O75161 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
NPHP4O75161 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP4O75161 FAM8A6P-201ENST00000407496 1135 ntBASIC28.82■■■□□ 2.2
NPHP4O75161 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC28.82■■■□□ 2.2
NPHP4O75161 EGLN1P1-201ENST00000531623 762 ntBASIC28.82■■■□□ 2.2
NPHP4O75161 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC28.82■■■□□ 2.2
NPHP4O75161 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP4O75161 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC28.82■■■□□ 2.2
NPHP4O75161 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC28.82■■■□□ 2.2
NPHP4O75161 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC28.82■■■□□ 2.2
NPHP4O75161 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP4O75161 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
NPHP4O75161 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC28.81■■■□□ 2.2
NPHP4O75161 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
NPHP4O75161 AC117947.1-201ENST00000427448 529 ntBASIC28.81■■■□□ 2.2
NPHP4O75161 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
NPHP4O75161 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC28.81■■■□□ 2.2
NPHP4O75161 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC28.81■■■□□ 2.2
NPHP4O75161 FAM87A-204ENST00000613235 858 ntBASIC28.81■■■□□ 2.2
NPHP4O75161 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC28.81■■■□□ 2.2
NPHP4O75161 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
NPHP4O75161 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC28.81■■■□□ 2.2
NPHP4O75161 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
NPHP4O75161 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
NPHP4O75161 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC28.81■■■□□ 2.2
NPHP4O75161 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
NPHP4O75161 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
NPHP4O75161 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC28.8■■■□□ 2.2
NPHP4O75161 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC28.8■■■□□ 2.2
NPHP4O75161 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
NPHP4O75161 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
NPHP4O75161 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
NPHP4O75161 SAPCD2P2-201ENST00000431719 1174 ntBASIC28.8■■■□□ 2.2
NPHP4O75161 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC28.8■■■□□ 2.2
NPHP4O75161 FAM99A-202ENST00000538190 1989 ntBASIC28.8■■■□□ 2.2
NPHP4O75161 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
NPHP4O75161 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC28.8■■■□□ 2.2
NPHP4O75161 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC28.8■■■□□ 2.2
NPHP4O75161 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
NPHP4O75161 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
NPHP4O75161 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC28.79■■■□□ 2.2
NPHP4O75161 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
NPHP4O75161 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
NPHP4O75161 COPS8-203ENST00000409334 794 ntTSL 5 BASIC28.79■■■□□ 2.2
NPHP4O75161 AC026396.1-201ENST00000419388 421 ntBASIC28.79■■■□□ 2.2
NPHP4O75161 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC28.79■■■□□ 2.2
NPHP4O75161 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
NPHP4O75161 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms