Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LDB3O75112 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LDB3O75112 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.09■□□□□ 0.65
LDB3O75112 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LDB3O75112 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
LDB3O75112 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LDB3O75112 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.09■□□□□ 0.65
LDB3O75112 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
LDB3O75112 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
LDB3O75112 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LDB3O75112 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
LDB3O75112 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
LDB3O75112 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
LDB3O75112 LINC01006-201ENST00000333319 2292 ntBASIC19.08■□□□□ 0.65
LDB3O75112 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
LDB3O75112 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LDB3O75112 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LDB3O75112 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
LDB3O75112 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LDB3O75112 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDB3O75112 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDB3O75112 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDB3O75112 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
LDB3O75112 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
LDB3O75112 AC098934.4-201ENST00000564127 592 ntBASIC19.08■□□□□ 0.64
LDB3O75112 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.08■□□□□ 0.64
LDB3O75112 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.08■□□□□ 0.64
LDB3O75112 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDB3O75112 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDB3O75112 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
LDB3O75112 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.08■□□□□ 0.64
LDB3O75112 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDB3O75112 AC092720.2-201ENST00000602388 1665 ntBASIC19.08■□□□□ 0.64
LDB3O75112 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.07■□□□□ 0.64
LDB3O75112 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.07■□□□□ 0.64
LDB3O75112 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.07■□□□□ 0.64
LDB3O75112 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.07■□□□□ 0.64
LDB3O75112 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.07■□□□□ 0.64
LDB3O75112 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.07■□□□□ 0.64
LDB3O75112 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.07■□□□□ 0.64
LDB3O75112 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.07■□□□□ 0.64
LDB3O75112 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LDB3O75112 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
LDB3O75112 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDB3O75112 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
LDB3O75112 AP005212.1-201ENST00000581547 1997 ntBASIC19.06■□□□□ 0.64
LDB3O75112 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDB3O75112 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDB3O75112 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LDB3O75112 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LDB3O75112 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.06■□□□□ 0.64
LDB3O75112 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDB3O75112 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDB3O75112 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDB3O75112 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LDB3O75112 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.06■□□□□ 0.64
LDB3O75112 MIR4758-201ENST00000577688 71 ntBASIC19.06■□□□□ 0.64
LDB3O75112 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDB3O75112 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDB3O75112 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.06■□□□□ 0.64
LDB3O75112 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LDB3O75112 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.06■□□□□ 0.64
LDB3O75112 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDB3O75112 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LDB3O75112 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.05■□□□□ 0.64
LDB3O75112 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.05■□□□□ 0.64
LDB3O75112 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.05■□□□□ 0.64
LDB3O75112 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LDB3O75112 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDB3O75112 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
LDB3O75112 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDB3O75112 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.05■□□□□ 0.64
LDB3O75112 DUSP5P2-201ENST00000426873 1033 ntBASIC19.05■□□□□ 0.64
LDB3O75112 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.05■□□□□ 0.64
LDB3O75112 AC092118.2-201ENST00000613495 667 ntBASIC19.05■□□□□ 0.64
LDB3O75112 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
LDB3O75112 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LDB3O75112 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
LDB3O75112 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
LDB3O75112 AC020907.5-201ENST00000624372 1936 ntBASIC19.05■□□□□ 0.64
LDB3O75112 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.05■□□□□ 0.64
LDB3O75112 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.05■□□□□ 0.64
LDB3O75112 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LDB3O75112 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDB3O75112 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.05■□□□□ 0.64
LDB3O75112 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms