Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SDC3O75056 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SDC3O75056 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.87■□□□□ 0.77
SDC3O75056 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDC3O75056 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
SDC3O75056 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDC3O75056 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.87■□□□□ 0.77
SDC3O75056 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDC3O75056 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SDC3O75056 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.86■□□□□ 0.77
SDC3O75056 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.86■□□□□ 0.77
SDC3O75056 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SDC3O75056 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SDC3O75056 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SDC3O75056 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SDC3O75056 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.86■□□□□ 0.77
SDC3O75056 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.86■□□□□ 0.77
SDC3O75056 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SDC3O75056 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SDC3O75056 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SDC3O75056 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SDC3O75056 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SDC3O75056 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.86■□□□□ 0.77
SDC3O75056 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.86■□□□□ 0.77
SDC3O75056 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SDC3O75056 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.86■□□□□ 0.77
SDC3O75056 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.86■□□□□ 0.77
SDC3O75056 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SDC3O75056 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SDC3O75056 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SDC3O75056 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SDC3O75056 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SDC3O75056 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SDC3O75056 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SDC3O75056 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SDC3O75056 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SDC3O75056 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.85■□□□□ 0.77
SDC3O75056 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SDC3O75056 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SDC3O75056 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SDC3O75056 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SDC3O75056 AC133681.1-201ENST00000465482 601 ntBASIC19.85■□□□□ 0.77
SDC3O75056 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.85■□□□□ 0.77
SDC3O75056 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
SDC3O75056 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.85■□□□□ 0.77
SDC3O75056 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SDC3O75056 AC110285.5-201ENST00000611501 352 ntBASIC19.85■□□□□ 0.77
SDC3O75056 REXO1L12P-201ENST00000622156 912 ntBASIC19.85■□□□□ 0.77
SDC3O75056 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SDC3O75056 FBXW4P1-201ENST00000426721 2239 ntBASIC19.85■□□□□ 0.77
SDC3O75056 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
SDC3O75056 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.85■□□□□ 0.77
SDC3O75056 AC011484.1-201ENST00000377652 1995 ntBASIC19.84■□□□□ 0.77
SDC3O75056 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.84■□□□□ 0.77
SDC3O75056 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SDC3O75056 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.84■□□□□ 0.77
SDC3O75056 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SDC3O75056 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.84■□□□□ 0.77
SDC3O75056 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SDC3O75056 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SDC3O75056 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SDC3O75056 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SDC3O75056 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SDC3O75056 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SDC3O75056 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.83■□□□□ 0.77
SDC3O75056 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.83■□□□□ 0.77
SDC3O75056 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SDC3O75056 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SDC3O75056 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.83■□□□□ 0.77
SDC3O75056 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
SDC3O75056 AC211429.1-201ENST00000415277 523 ntBASIC19.83■□□□□ 0.77
SDC3O75056 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.83■□□□□ 0.77
SDC3O75056 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.83■□□□□ 0.77
SDC3O75056 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.83■□□□□ 0.77
SDC3O75056 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.83■□□□□ 0.77
SDC3O75056 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SDC3O75056 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.83■□□□□ 0.77
SDC3O75056 AL049637.2-201ENST00000641778 930 ntBASIC19.83■□□□□ 0.77
SDC3O75056 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.83■□□□□ 0.76
SDC3O75056 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SDC3O75056 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.83■□□□□ 0.76
SDC3O75056 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.83■□□□□ 0.76
SDC3O75056 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SDC3O75056 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.83■□□□□ 0.76
SDC3O75056 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SDC3O75056 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SDC3O75056 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms