Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 MIR5787-201ENST00000611784 55 ntBASIC21.87■■□□□ 1.09
SIX2Q9NPC8 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SIX2Q9NPC8 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 RARRES2P4-201ENST00000514074 484 ntBASIC21.85■■□□□ 1.09
SIX2Q9NPC8 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.85■■□□□ 1.09
SIX2Q9NPC8 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 AC022517.1-201ENST00000592429 346 ntBASIC21.84■■□□□ 1.09
SIX2Q9NPC8 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
SIX2Q9NPC8 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.83■■□□□ 1.09
SIX2Q9NPC8 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.83■■□□□ 1.09
SIX2Q9NPC8 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
SIX2Q9NPC8 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SIX2Q9NPC8 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SIX2Q9NPC8 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
SIX2Q9NPC8 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
SIX2Q9NPC8 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.83■■□□□ 1.09
SIX2Q9NPC8 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.83■■□□□ 1.09
SIX2Q9NPC8 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SIX2Q9NPC8 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SIX2Q9NPC8 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.83■■□□□ 1.08
SIX2Q9NPC8 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SIX2Q9NPC8 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 BID-214ENST00000617586 542 ntTSL 5 BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 AC092437.1-201ENST00000624794 1048 ntBASIC21.82■■□□□ 1.08
SIX2Q9NPC8 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
SIX2Q9NPC8 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
SIX2Q9NPC8 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SIX2Q9NPC8 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.81■■□□□ 1.08
SIX2Q9NPC8 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
SIX2Q9NPC8 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SIX2Q9NPC8 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.81■■□□□ 1.08
SIX2Q9NPC8 CYP2T1P-201ENST00000432607 1285 ntBASIC21.81■■□□□ 1.08
SIX2Q9NPC8 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.81■■□□□ 1.08
SIX2Q9NPC8 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SIX2Q9NPC8 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SIX2Q9NPC8 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms