Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 EEF1DP3-203ENST00000566025 782 ntBASIC12.05□□□□□ -0.48
LIMD2Q9BT23 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 MIR6084-201ENST00000622012 110 ntBASIC12.05□□□□□ -0.48
LIMD2Q9BT23 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LIMD2Q9BT23 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 ADM-207ENST00000530439 1839 ntTSL 2 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 AC123595.1-201ENST00000440769 1046 ntBASIC12.04□□□□□ -0.48
LIMD2Q9BT23 STOX2-205ENST00000513034 807 ntTSL 3 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
LIMD2Q9BT23 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 YBX1P1-201ENST00000445822 960 ntBASIC12.03□□□□□ -0.48
LIMD2Q9BT23 AC245052.3-201ENST00000450182 901 ntBASIC12.03□□□□□ -0.48
LIMD2Q9BT23 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LIMD2Q9BT23 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
LIMD2Q9BT23 PODN-203ENST00000395871 2744 ntTSL 5 BASIC12.02□□□□□ -0.48
LIMD2Q9BT23 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC12.02□□□□□ -0.48
LIMD2Q9BT23 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LIMD2Q9BT23 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
LIMD2Q9BT23 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
LIMD2Q9BT23 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.48
LIMD2Q9BT23 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LIMD2Q9BT23 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms