Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
CCDC88AQ3V6T2 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC25.06■■□□□ 1.6
CCDC88AQ3V6T2 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
CCDC88AQ3V6T2 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC25.06■■□□□ 1.6
CCDC88AQ3V6T2 AC079598.2-202ENST00000546624 1451 ntBASIC25.06■■□□□ 1.6
CCDC88AQ3V6T2 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC88AQ3V6T2 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
CCDC88AQ3V6T2 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC88AQ3V6T2 NTF6B-201ENST00000591913 560 ntBASIC25.06■■□□□ 1.6
CCDC88AQ3V6T2 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC25.06■■□□□ 1.6
CCDC88AQ3V6T2 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
CCDC88AQ3V6T2 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC25.05■■□□□ 1.6
CCDC88AQ3V6T2 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC88AQ3V6T2 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC25.05■■□□□ 1.6
CCDC88AQ3V6T2 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC25.05■■□□□ 1.6
CCDC88AQ3V6T2 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC25.05■■□□□ 1.6
CCDC88AQ3V6T2 AL031963.3-201ENST00000606441 850 ntBASIC25.05■■□□□ 1.6
CCDC88AQ3V6T2 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC88AQ3V6T2 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC25.05■■□□□ 1.6
CCDC88AQ3V6T2 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
CCDC88AQ3V6T2 HES2-206ENST00000489730 730 ntTSL 2 BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 RMI2-205ENST00000576027 818 ntTSL 2 BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 UNC93B2-201ENST00000285383 730 ntBASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 AL353807.1-201ENST00000427475 662 ntBASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC25.04■■□□□ 1.6
CCDC88AQ3V6T2 MFF-203ENST00000349901 1716 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 TREX2-204ENST00000370212 861 ntTSL 5 BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC88AQ3V6T2 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 KRT16P5-201ENST00000455284 522 ntBASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 AF186192.3-201ENST00000583427 947 ntBASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 BRWD1-AS2-201ENST00000603064 1028 ntBASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 RBM17P1-201ENST00000453646 1190 ntBASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC25.02■■□□□ 1.6
CCDC88AQ3V6T2 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC88AQ3V6T2 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
CCDC88AQ3V6T2 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC88AQ3V6T2 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
CCDC88AQ3V6T2 AL355355.2-201ENST00000442321 338 ntBASIC25.01■■□□□ 1.59
CCDC88AQ3V6T2 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC88AQ3V6T2 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
CCDC88AQ3V6T2 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC88AQ3V6T2 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC88AQ3V6T2 LSR-203ENST00000360798 1963 ntTSL 2 BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 TERF1P1-201ENST00000311003 1181 ntBASIC25■■□□□ 1.59
CCDC88AQ3V6T2 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 RPS15-203ENST00000586096 570 ntTSL 2 BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 SAPCD2P4-201ENST00000424595 1171 ntBASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms