Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA1P55317 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
FOXA1P55317 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXA1P55317 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA1P55317 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA1P55317 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.67■□□□□ 0.74
FOXA1P55317 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.67■□□□□ 0.74
FOXA1P55317 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA1P55317 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.67■□□□□ 0.74
FOXA1P55317 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA1P55317 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.67■□□□□ 0.74
FOXA1P55317 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA1P55317 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA1P55317 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
FOXA1P55317 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA1P55317 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA1P55317 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA1P55317 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.67■□□□□ 0.74
FOXA1P55317 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA1P55317 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA1P55317 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
FOXA1P55317 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.66■□□□□ 0.74
FOXA1P55317 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.66■□□□□ 0.74
FOXA1P55317 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.66■□□□□ 0.74
FOXA1P55317 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 UBE2DNL-204ENST00000602536 740 ntBASIC19.66■□□□□ 0.74
FOXA1P55317 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.66■□□□□ 0.74
FOXA1P55317 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.66■□□□□ 0.74
FOXA1P55317 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.66■□□□□ 0.74
FOXA1P55317 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.66■□□□□ 0.74
FOXA1P55317 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.66■□□□□ 0.74
FOXA1P55317 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
FOXA1P55317 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
FOXA1P55317 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA1P55317 DPP3P2-201ENST00000416030 1696 ntBASIC19.65■□□□□ 0.74
FOXA1P55317 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXA1P55317 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.65■□□□□ 0.74
FOXA1P55317 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXA1P55317 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
FOXA1P55317 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.65■□□□□ 0.74
FOXA1P55317 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
FOXA1P55317 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.65■□□□□ 0.74
FOXA1P55317 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXA1P55317 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXA1P55317 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
FOXA1P55317 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXA1P55317 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXA1P55317 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.65■□□□□ 0.74
FOXA1P55317 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.65■□□□□ 0.74
FOXA1P55317 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXA1P55317 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
FOXA1P55317 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.65■□□□□ 0.74
FOXA1P55317 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXA1P55317 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
FOXA1P55317 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
FOXA1P55317 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.64■□□□□ 0.74
FOXA1P55317 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA1P55317 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA1P55317 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA1P55317 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.64■□□□□ 0.73
FOXA1P55317 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.64■□□□□ 0.73
FOXA1P55317 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.64■□□□□ 0.73
FOXA1P55317 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.64■□□□□ 0.73
FOXA1P55317 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA1P55317 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.64■□□□□ 0.73
FOXA1P55317 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA1P55317 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.64■□□□□ 0.73
FOXA1P55317 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA1P55317 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
FOXA1P55317 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA1P55317 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.63■□□□□ 0.73
FOXA1P55317 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA1P55317 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
FOXA1P55317 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA1P55317 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA1P55317 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA1P55317 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA1P55317 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA1P55317 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA1P55317 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.63■□□□□ 0.73
FOXA1P55317 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.63■□□□□ 0.73
FOXA1P55317 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
FOXA1P55317 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA1P55317 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.63■□□□□ 0.73
FOXA1P55317 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms