Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDH4P55283 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.8■□□□□ 0.92
CDH4P55283 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDH4P55283 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDH4P55283 CLDN5-201ENST00000403084 2357 ntBASIC20.8■□□□□ 0.92
CDH4P55283 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDH4P55283 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH4P55283 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH4P55283 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CDH4P55283 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH4P55283 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH4P55283 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH4P55283 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH4P55283 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.79■□□□□ 0.92
CDH4P55283 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CDH4P55283 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.79■□□□□ 0.92
CDH4P55283 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CDH4P55283 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH4P55283 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDH4P55283 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDH4P55283 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH4P55283 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH4P55283 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CDH4P55283 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH4P55283 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDH4P55283 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDH4P55283 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.78■□□□□ 0.92
CDH4P55283 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CDH4P55283 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.78■□□□□ 0.92
CDH4P55283 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH4P55283 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH4P55283 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.78■□□□□ 0.92
CDH4P55283 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.78■□□□□ 0.92
CDH4P55283 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH4P55283 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH4P55283 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH4P55283 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.77■□□□□ 0.92
CDH4P55283 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH4P55283 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH4P55283 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH4P55283 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDH4P55283 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.77■□□□□ 0.92
CDH4P55283 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.77■□□□□ 0.92
CDH4P55283 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.77■□□□□ 0.92
CDH4P55283 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.77■□□□□ 0.92
CDH4P55283 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDH4P55283 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.77■□□□□ 0.92
CDH4P55283 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH4P55283 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH4P55283 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.77■□□□□ 0.92
CDH4P55283 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CDH4P55283 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH4P55283 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.77■□□□□ 0.92
CDH4P55283 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CDH4P55283 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
CDH4P55283 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH4P55283 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.76■□□□□ 0.91
CDH4P55283 AC092368.3-202ENST00000574180 1591 ntBASIC20.76■□□□□ 0.91
CDH4P55283 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH4P55283 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH4P55283 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CDH4P55283 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
CDH4P55283 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.76■□□□□ 0.91
CDH4P55283 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH4P55283 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.76■□□□□ 0.91
CDH4P55283 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH4P55283 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.76■□□□□ 0.91
CDH4P55283 PNMA6B-201ENST00000538162 1200 ntBASIC20.76■□□□□ 0.91
CDH4P55283 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CDH4P55283 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH4P55283 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH4P55283 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH4P55283 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.76■□□□□ 0.91
CDH4P55283 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.76■□□□□ 0.91
CDH4P55283 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDH4P55283 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDH4P55283 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH4P55283 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH4P55283 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH4P55283 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH4P55283 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH4P55283 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH4P55283 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH4P55283 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH4P55283 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH4P55283 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH4P55283 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.75■□□□□ 0.91
CDH4P55283 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.75■□□□□ 0.91
CDH4P55283 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.75■□□□□ 0.91
CDH4P55283 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.75■□□□□ 0.91
CDH4P55283 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
CDH4P55283 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.75■□□□□ 0.91
CDH4P55283 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH4P55283 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.75■□□□□ 0.91
CDH4P55283 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH4P55283 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.75■□□□□ 0.91
CDH4P55283 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.75■□□□□ 0.91
CDH4P55283 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.75■□□□□ 0.91
CDH4P55283 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.75■□□□□ 0.91
CDH4P55283 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms