Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.36■□□□□ 0.85
CXCL12P48061 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CXCL12P48061 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CXCL12P48061 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CXCL12P48061 AC079598.2-202ENST00000546624 1451 ntBASIC20.36■□□□□ 0.85
CXCL12P48061 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CXCL12P48061 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.36■□□□□ 0.85
CXCL12P48061 LINC01568-207ENST00000641790 1380 ntBASIC20.35■□□□□ 0.85
CXCL12P48061 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.35■□□□□ 0.85
CXCL12P48061 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CXCL12P48061 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CXCL12P48061 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CXCL12P48061 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CXCL12P48061 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CXCL12P48061 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CXCL12P48061 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CXCL12P48061 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CXCL12P48061 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.35■□□□□ 0.85
CXCL12P48061 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.35■□□□□ 0.85
CXCL12P48061 AC023632.3-201ENST00000521633 145 ntBASIC20.35■□□□□ 0.85
CXCL12P48061 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.35■□□□□ 0.85
CXCL12P48061 AP000525.1-201ENST00000608286 694 ntBASIC20.35■□□□□ 0.85
CXCL12P48061 REXO1L10P-201ENST00000615707 1290 ntBASIC20.35■□□□□ 0.85
CXCL12P48061 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.35■□□□□ 0.85
CXCL12P48061 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CXCL12P48061 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.35■□□□□ 0.85
CXCL12P48061 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CXCL12P48061 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CXCL12P48061 KRT8P9-201ENST00000558927 1449 ntBASIC20.35■□□□□ 0.85
CXCL12P48061 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CXCL12P48061 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CXCL12P48061 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.35■□□□□ 0.85
CXCL12P48061 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CXCL12P48061 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.34■□□□□ 0.85
CXCL12P48061 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.34■□□□□ 0.85
CXCL12P48061 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CXCL12P48061 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.34■□□□□ 0.85
CXCL12P48061 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.34■□□□□ 0.85
CXCL12P48061 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CXCL12P48061 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.34■□□□□ 0.85
CXCL12P48061 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.34■□□□□ 0.85
CXCL12P48061 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.34■□□□□ 0.85
CXCL12P48061 MIR1238-201ENST00000408483 83 ntBASIC20.34■□□□□ 0.85
CXCL12P48061 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.34■□□□□ 0.85
CXCL12P48061 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.34■□□□□ 0.85
CXCL12P48061 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.34■□□□□ 0.85
CXCL12P48061 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.34■□□□□ 0.85
CXCL12P48061 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CXCL12P48061 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.34■□□□□ 0.85
CXCL12P48061 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.34■□□□□ 0.85
CXCL12P48061 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.34■□□□□ 0.85
CXCL12P48061 AL031963.3-201ENST00000606441 850 ntBASIC20.34■□□□□ 0.85
CXCL12P48061 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CXCL12P48061 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CXCL12P48061 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CXCL12P48061 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.34■□□□□ 0.85
CXCL12P48061 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CXCL12P48061 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CXCL12P48061 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CXCL12P48061 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CXCL12P48061 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CXCL12P48061 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.34■□□□□ 0.85
CXCL12P48061 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.34■□□□□ 0.85
CXCL12P48061 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CXCL12P48061 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CXCL12P48061 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CXCL12P48061 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CXCL12P48061 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CXCL12P48061 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CXCL12P48061 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
CXCL12P48061 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CXCL12P48061 AC113347.1-201ENST00000413321 391 ntBASIC20.33■□□□□ 0.85
CXCL12P48061 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.33■□□□□ 0.85
CXCL12P48061 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.33■□□□□ 0.85
CXCL12P48061 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.33■□□□□ 0.85
CXCL12P48061 AL121906.2-201ENST00000621597 723 ntBASIC20.33■□□□□ 0.85
CXCL12P48061 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CXCL12P48061 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.32■□□□□ 0.84
CXCL12P48061 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CXCL12P48061 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CXCL12P48061 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
CXCL12P48061 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.32■□□□□ 0.84
CXCL12P48061 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CXCL12P48061 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CXCL12P48061 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.32■□□□□ 0.84
CXCL12P48061 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.32■□□□□ 0.84
CXCL12P48061 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CXCL12P48061 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CXCL12P48061 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CXCL12P48061 AC124283.5-201ENST00000624661 1809 ntBASIC20.32■□□□□ 0.84
CXCL12P48061 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CXCL12P48061 KRT18P22-201ENST00000402024 1347 ntBASIC20.31■□□□□ 0.84
CXCL12P48061 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.31■□□□□ 0.84
CXCL12P48061 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.31■□□□□ 0.84
CXCL12P48061 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.31■□□□□ 0.84
CXCL12P48061 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.31■□□□□ 0.84
CXCL12P48061 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CXCL12P48061 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.31■□□□□ 0.84
CXCL12P48061 AL137013.1-201ENST00000432946 1228 ntBASIC20.31■□□□□ 0.84
CXCL12P48061 NAPSB-206ENST00000562112 1266 ntBASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms