Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.01■□□□□ 0.79
SNX3O60493 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SNX3O60493 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SNX3O60493 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SNX3O60493 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SNX3O60493 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SNX3O60493 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.01■□□□□ 0.79
SNX3O60493 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20■□□□□ 0.79
SNX3O60493 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20■□□□□ 0.79
SNX3O60493 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SNX3O60493 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SNX3O60493 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SNX3O60493 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SNX3O60493 SMUG1P1-201ENST00000590640 811 ntBASIC20■□□□□ 0.79
SNX3O60493 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SNX3O60493 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SNX3O60493 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SNX3O60493 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SNX3O60493 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20■□□□□ 0.79
SNX3O60493 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SNX3O60493 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20■□□□□ 0.79
SNX3O60493 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SNX3O60493 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SNX3O60493 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SNX3O60493 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SNX3O60493 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.99■□□□□ 0.79
SNX3O60493 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
SNX3O60493 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SNX3O60493 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.99■□□□□ 0.79
SNX3O60493 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.99■□□□□ 0.79
SNX3O60493 AC007613.1-201ENST00000572811 2597 ntBASIC19.99■□□□□ 0.79
SNX3O60493 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
SNX3O60493 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
SNX3O60493 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.99■□□□□ 0.79
SNX3O60493 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SNX3O60493 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.98■□□□□ 0.79
SNX3O60493 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.98■□□□□ 0.79
SNX3O60493 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.98■□□□□ 0.79
SNX3O60493 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SNX3O60493 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SNX3O60493 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.98■□□□□ 0.79
SNX3O60493 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.98■□□□□ 0.79
SNX3O60493 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SNX3O60493 MIR6724-1-201ENST00000616420 92 ntBASIC19.98■□□□□ 0.79
SNX3O60493 MIR6724-2-201ENST00000616483 92 ntBASIC19.98■□□□□ 0.79
SNX3O60493 MIR6724-4-201ENST00000617390 92 ntBASIC19.98■□□□□ 0.79
SNX3O60493 MIR6724-3-201ENST00000622482 92 ntBASIC19.98■□□□□ 0.79
SNX3O60493 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.98■□□□□ 0.79
SNX3O60493 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.98■□□□□ 0.79
SNX3O60493 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SNX3O60493 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.98■□□□□ 0.79
SNX3O60493 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
SNX3O60493 AL138781.2-201ENST00000617896 1843 ntBASIC19.97■□□□□ 0.79
SNX3O60493 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SNX3O60493 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SNX3O60493 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SNX3O60493 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SNX3O60493 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SNX3O60493 TSPY9P-201ENST00000440215 945 ntBASIC19.97■□□□□ 0.79
SNX3O60493 TSPY11P-201ENST00000442607 1045 ntBASIC19.97■□□□□ 0.79
SNX3O60493 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.97■□□□□ 0.79
SNX3O60493 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SNX3O60493 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.97■□□□□ 0.79
SNX3O60493 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SNX3O60493 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
SNX3O60493 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.97■□□□□ 0.79
SNX3O60493 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SNX3O60493 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.97■□□□□ 0.79
SNX3O60493 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SNX3O60493 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SNX3O60493 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SNX3O60493 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.96■□□□□ 0.79
SNX3O60493 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SNX3O60493 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.96■□□□□ 0.79
SNX3O60493 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SNX3O60493 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
SNX3O60493 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SNX3O60493 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
SNX3O60493 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.96■□□□□ 0.79
SNX3O60493 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SNX3O60493 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
SNX3O60493 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.96■□□□□ 0.79
SNX3O60493 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.96■□□□□ 0.79
SNX3O60493 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SNX3O60493 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SNX3O60493 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.96■□□□□ 0.79
SNX3O60493 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SNX3O60493 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.96■□□□□ 0.79
SNX3O60493 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SNX3O60493 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SNX3O60493 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SNX3O60493 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SNX3O60493 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SNX3O60493 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SNX3O60493 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SNX3O60493 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SNX3O60493 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SNX3O60493 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SNX3O60493 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SNX3O60493 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms