Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 AL162412.1-201ENST00000567129 965 ntBASIC21.92■■□□□ 1.1
SIX2Q9NPC8 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 CYP21A1P-202ENST00000354927 1481 ntBASIC21.91■■□□□ 1.1
SIX2Q9NPC8 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
SIX2Q9NPC8 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX2Q9NPC8 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX2Q9NPC8 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX2Q9NPC8 AC068338.2-201ENST00000563278 1430 ntBASIC21.9■■□□□ 1.1
SIX2Q9NPC8 AC087633.2-202ENST00000565166 1439 ntBASIC21.9■■□□□ 1.1
SIX2Q9NPC8 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX2Q9NPC8 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX2Q9NPC8 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SIX2Q9NPC8 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.9■■□□□ 1.1
SIX2Q9NPC8 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.9■■□□□ 1.1
SIX2Q9NPC8 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.9■■□□□ 1.1
SIX2Q9NPC8 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
SIX2Q9NPC8 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.9■■□□□ 1.1
SIX2Q9NPC8 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
SIX2Q9NPC8 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
SIX2Q9NPC8 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SIX2Q9NPC8 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SIX2Q9NPC8 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
SIX2Q9NPC8 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SIX2Q9NPC8 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.89■■□□□ 1.09
SIX2Q9NPC8 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
SIX2Q9NPC8 TCF3P1-201ENST00000423021 1937 ntBASIC21.89■■□□□ 1.09
SIX2Q9NPC8 AC016769.1-201ENST00000409132 1010 ntBASIC21.89■■□□□ 1.09
SIX2Q9NPC8 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.89■■□□□ 1.09
SIX2Q9NPC8 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.89■■□□□ 1.09
SIX2Q9NPC8 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SIX2Q9NPC8 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SIX2Q9NPC8 AFG3L1P-217ENST00000557444 2447 ntBASIC21.89■■□□□ 1.09
SIX2Q9NPC8 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
SIX2Q9NPC8 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SIX2Q9NPC8 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SIX2Q9NPC8 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
SIX2Q9NPC8 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 AL356652.1-201ENST00000615962 565 ntBASIC21.88■■□□□ 1.09
SIX2Q9NPC8 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 DPP3P2-201ENST00000416030 1696 ntBASIC21.88■■□□□ 1.09
SIX2Q9NPC8 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.88■■□□□ 1.09
SIX2Q9NPC8 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SIX2Q9NPC8 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms