Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.36■■□□□ 1.01
CDCA3Q99618 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CDCA3Q99618 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CDCA3Q99618 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDCA3Q99618 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.36■■□□□ 1.01
CDCA3Q99618 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CDCA3Q99618 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.36■■□□□ 1.01
CDCA3Q99618 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC21.36■■□□□ 1.01
CDCA3Q99618 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.36■■□□□ 1.01
CDCA3Q99618 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.36■■□□□ 1.01
CDCA3Q99618 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDCA3Q99618 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDCA3Q99618 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
CDCA3Q99618 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDCA3Q99618 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDCA3Q99618 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDCA3Q99618 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.36■■□□□ 1.01
CDCA3Q99618 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.35■■□□□ 1.01
CDCA3Q99618 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
CDCA3Q99618 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDCA3Q99618 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.35■■□□□ 1.01
CDCA3Q99618 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDCA3Q99618 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.35■■□□□ 1.01
CDCA3Q99618 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDCA3Q99618 AC004264.1-201ENST00000608354 794 ntBASIC21.35■■□□□ 1.01
CDCA3Q99618 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.35■■□□□ 1.01
CDCA3Q99618 AL121906.2-201ENST00000621597 723 ntBASIC21.35■■□□□ 1.01
CDCA3Q99618 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.35■■□□□ 1.01
CDCA3Q99618 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDCA3Q99618 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDCA3Q99618 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CDCA3Q99618 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDCA3Q99618 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDCA3Q99618 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDCA3Q99618 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDCA3Q99618 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDCA3Q99618 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDCA3Q99618 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.34■■□□□ 1.01
CDCA3Q99618 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDCA3Q99618 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDCA3Q99618 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDCA3Q99618 UNC93B2-201ENST00000285383 730 ntBASIC21.34■■□□□ 1.01
CDCA3Q99618 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDCA3Q99618 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
CDCA3Q99618 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.34■■□□□ 1.01
CDCA3Q99618 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.34■■□□□ 1.01
CDCA3Q99618 NUDT16P1-203ENST00000513809 620 ntBASIC21.34■■□□□ 1.01
CDCA3Q99618 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.34■■□□□ 1.01
CDCA3Q99618 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.34■■□□□ 1.01
CDCA3Q99618 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.34■■□□□ 1.01
CDCA3Q99618 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
CDCA3Q99618 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDCA3Q99618 MIR6786-201ENST00000616843 113 ntBASIC21.34■■□□□ 1.01
CDCA3Q99618 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.34■■□□□ 1.01
CDCA3Q99618 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.34■■□□□ 1.01
CDCA3Q99618 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDCA3Q99618 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.33■■□□□ 1.01
CDCA3Q99618 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDCA3Q99618 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDCA3Q99618 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDCA3Q99618 C1orf229-201ENST00000623686 2258 ntBASIC21.33■■□□□ 1.01
CDCA3Q99618 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDCA3Q99618 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDCA3Q99618 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
CDCA3Q99618 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDCA3Q99618 RBM17P1-201ENST00000453646 1190 ntBASIC21.33■■□□□ 1.01
CDCA3Q99618 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDCA3Q99618 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.33■■□□□ 1.01
CDCA3Q99618 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.33■■□□□ 1.01
CDCA3Q99618 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.33■■□□□ 1.01
CDCA3Q99618 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
CDCA3Q99618 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
CDCA3Q99618 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.33■■□□□ 1
CDCA3Q99618 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.33■■□□□ 1
CDCA3Q99618 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.32■■□□□ 1
CDCA3Q99618 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.32■■□□□ 1
CDCA3Q99618 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CDCA3Q99618 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDCA3Q99618 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.32■■□□□ 1
CDCA3Q99618 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDCA3Q99618 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.32■■□□□ 1
CDCA3Q99618 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.32■■□□□ 1
CDCA3Q99618 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.32■■□□□ 1
CDCA3Q99618 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.32■■□□□ 1
CDCA3Q99618 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.32■■□□□ 1
CDCA3Q99618 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.32■■□□□ 1
CDCA3Q99618 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDCA3Q99618 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.32■■□□□ 1
CDCA3Q99618 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.32■■□□□ 1
CDCA3Q99618 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDCA3Q99618 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.31■■□□□ 1
CDCA3Q99618 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDCA3Q99618 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CDCA3Q99618 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.31■■□□□ 1
CDCA3Q99618 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.31■■□□□ 1
CDCA3Q99618 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CDCA3Q99618 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.31■■□□□ 1
CDCA3Q99618 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDCA3Q99618 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CDCA3Q99618 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms