Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS50Q96JG6 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS50Q96JG6 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS50Q96JG6 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS50Q96JG6 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS50Q96JG6 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS50Q96JG6 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS50Q96JG6 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS50Q96JG6 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS50Q96JG6 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS50Q96JG6 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS50Q96JG6 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS50Q96JG6 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS50Q96JG6 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS50Q96JG6 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS50Q96JG6 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
VPS50Q96JG6 NCF1B-203ENST00000435988 1254 ntBASIC19.81■□□□□ 0.76
VPS50Q96JG6 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS50Q96JG6 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS50Q96JG6 AL109923.1-201ENST00000618799 583 ntBASIC19.81■□□□□ 0.76
VPS50Q96JG6 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS50Q96JG6 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS50Q96JG6 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS50Q96JG6 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
VPS50Q96JG6 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS50Q96JG6 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS50Q96JG6 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS50Q96JG6 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS50Q96JG6 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS50Q96JG6 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS50Q96JG6 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
VPS50Q96JG6 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS50Q96JG6 CROCCP5-201ENST00000436658 830 ntBASIC19.8■□□□□ 0.76
VPS50Q96JG6 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS50Q96JG6 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS50Q96JG6 DUX4L16-201ENST00000555130 1264 ntBASIC19.8■□□□□ 0.76
VPS50Q96JG6 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.8■□□□□ 0.76
VPS50Q96JG6 AC005181.1-201ENST00000604782 1256 ntBASIC19.8■□□□□ 0.76
VPS50Q96JG6 AL121832.2-201ENST00000610979 668 ntBASIC19.8■□□□□ 0.76
VPS50Q96JG6 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
VPS50Q96JG6 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS50Q96JG6 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
VPS50Q96JG6 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS50Q96JG6 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS50Q96JG6 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS50Q96JG6 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS50Q96JG6 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS50Q96JG6 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS50Q96JG6 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS50Q96JG6 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS50Q96JG6 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS50Q96JG6 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
VPS50Q96JG6 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS50Q96JG6 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS50Q96JG6 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS50Q96JG6 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS50Q96JG6 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS50Q96JG6 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS50Q96JG6 AC010536.3-201ENST00000620306 533 ntBASIC19.79■□□□□ 0.76
VPS50Q96JG6 AC013268.1-206ENST00000638368 961 ntBASIC19.79■□□□□ 0.76
VPS50Q96JG6 AC112229.1-201ENST00000639295 961 ntBASIC19.79■□□□□ 0.76
VPS50Q96JG6 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS50Q96JG6 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS50Q96JG6 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS50Q96JG6 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS50Q96JG6 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS50Q96JG6 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS50Q96JG6 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS50Q96JG6 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS50Q96JG6 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS50Q96JG6 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS50Q96JG6 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS50Q96JG6 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS50Q96JG6 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
VPS50Q96JG6 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS50Q96JG6 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS50Q96JG6 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS50Q96JG6 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS50Q96JG6 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.78■□□□□ 0.76
VPS50Q96JG6 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
VPS50Q96JG6 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS50Q96JG6 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS50Q96JG6 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS50Q96JG6 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS50Q96JG6 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS50Q96JG6 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS50Q96JG6 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
VPS50Q96JG6 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS50Q96JG6 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS50Q96JG6 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
VPS50Q96JG6 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS50Q96JG6 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS50Q96JG6 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms